Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT0248 and BT0249 are separated by 69 nucleotidesBT0249 and BT0250 are separated by 25 nucleotidesBT0250 and BT0251 overlap by 4 nucleotidesBT0251 and BT0252 are separated by 244 nucleotides BT0248: BT0248 - RNA polymerase ECF-type sigma factor (NCBI ptt file), at 273,972 to 274,481 BT0248 BT0249: BT0249 - 5-methyltetrahydrofolate--homocysteine methyltransferase or methionine synthase (NCBI ptt file), at 274,551 to 275,453 BT0249 BT0250: BT0250 - dihydroorotase (DHOase) (NCBI ptt file), at 275,479 to 276,816 BT0250 BT0251: BT0251 - dolichol-phosphate mannosyltransferase (NCBI ptt file), at 276,813 to 277,556 BT0251 BT0252: BT0252 - transcription-repair coupling factor (NCBI ptt file), at 277,801 to 281,184 BT0252
Group Condition BT0248 BT0249 BT0250 BT0251 BT0252
mouse_post_colonization Post-colonization (Day 4) - Cage5;Mouse5 -0.5 -3.3 N.D. N.D. -0.7
mouse_post_colonization Post-colonization (Day 6) - Cage3;Mouse2 -0.2 -3.5 N.D. N.D. -0.8
mouse_post_colonization Post-colonization (Day 6) - Cage4;Mouse4 -0.5 -3.3 N.D. N.D. -0.5
stress BHIS with Chlorpromazine 0.2 mM -1.3 -1.9 N.D. N.D. -0.9
mouse_post_colonization Post-colonization (Day 10) - Cage3;Mouse4 -0.4 -3.2 N.D. N.D. -0.5
mouse_post_colonization Post-colonization (Day 8) - Cage4;Mouse4 -0.6 -3.2 N.D. N.D. -0.3
mouse_post_colonization Post-colonization (Day 14) - Cage3;Mouse3 -0.5 -3.1 N.D. N.D. -0.5
mouse_post_colonization Post-colonization (Day 4) - Cage5;Mouse2 -0.6 -3.1 N.D. N.D. -0.3
mouse_post_colonization Post-colonization (Day 6) - Cage5;Mouse1 -0.4 -3.4 N.D. N.D. -0.2
mouse_post_colonization Post-colonization (Day 8) - Cage3;Mouse2 -0.6 -2.8 N.D. N.D. -0.5
mouse_post_colonization Post-colonization (Day 4) - Cage4;Mouse4 -0.0 -3.4 N.D. N.D. -0.4
mouse_post_colonization Post-colonization (Day 10) - Cage2;Mouse1 -0.6 -2.9 N.D. N.D. -0.3
stress BHIS with Trimethoprim 0.0125 mM -0.7 -2.1 N.D. N.D. -1.0
mouse_post_colonization Post-colonization (Day 4) - Cage1;Mouse2 -0.3 -2.9 N.D. N.D. -0.5
mouse_post_colonization Post-colonization (Day 8) - Cage7;Mouse2 -0.5 -2.7 N.D. N.D. -0.5
mouse_post_colonization Post-colonization (Day 4) - Cage3;Mouse2 -0.1 -2.9 N.D. N.D. -0.7
mouse_post_colonization Post-colonization (Day 8) - Cage5;Mouse5 -0.6 -2.9 N.D. N.D. -0.3
mouse_post_colonization Post-colonization (Day 1) - Cage5;Mouse4 -0.3 -2.9 N.D. N.D. -0.5
mouse_post_colonization Post-colonization (Day 8) - Cage3;Mouse1 -0.2 -3.3 N.D. N.D. -0.2
mouse_post_colonization Post-colonization (Day 3) - Cage3;Mouse4 -0.3 -3.0 N.D. N.D. -0.4
mouse_post_colonization Post-colonization (Day 4) - Cage3;Mouse4 -0.3 -3.4 N.D. N.D. -0.0
mouse_post_colonization Post-colonization (Day 8) - Cage6;Mouse1 -0.1 -2.9 N.D. N.D. -0.5
mouse_post_colonization Post-colonization (Day 6) - Cage1;Mouse1 -0.6 -2.6 N.D. N.D. -0.3
mouse_post_colonization Post-colonization (Day 3) - Cage3;Mouse1 -0.2 -2.6 N.D. N.D. -0.7
mouse_post_colonization Post-colonization (Day 12) - Cage4;Mouse1 -0.7 -2.3 N.D. N.D. -0.5
mouse_post_colonization Post-colonization (Day 6) - Cage1;Mouse3 -0.3 -2.7 N.D. N.D. -0.4
mouse_post_colonization Post-colonization (Day 3) - Cage5;Mouse1 -0.1 -2.9 N.D. N.D. -0.5
stress BHIS with Trimethoprim 0.00625 mM -0.2 -2.0 N.D. N.D. -1.2
mouse Post-colonization (Day 2) - Cage1A;Mouse3 -0.0 -3.4 N.D. N.D. +0.1
nitrogen source L-aspartic (N) -1.5 -1.0 N.D. N.D. +1.0
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