Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT0202 and BT0203 are separated by 3 nucleotidesBT0203 and BT0204 are separated by 90 nucleotidesBT0204 and BT0205 are separated by 114 nucleotidesBT0205 and BT0206 are separated by 657 nucleotides BT0202: BT0202 - histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data), at 217,238 to 218,278 BT0202 BT0203: BT0203 - histidine biosynthesis bifunctional protein hisB (NCBI ptt file), at 218,282 to 219,406 BT0203 BT0204: BT0204 - conserved hypothetical protein (NCBI ptt file), at 219,497 to 220,006 BT0204 BT0205: BT0205 - glutamine-dependent NAD+ synthetase (NCBI ptt file), at 220,121 to 222,046 BT0205 BT0206: BT0206 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 222,704 to 225,646 BT0206
Group Condition BT0202 BT0203 BT0204 BT0205 BT0206
carbon source D-Xylose (C) -5.9 -5.9 -0.4 N.D. -0.2
carbon source L-Rhamnose (C) -5.5 -5.5 -0.7 N.D. -0.6
carbon source D-Galacturonic Acid (C) -4.6 -5.9 -0.6 N.D. -0.2
carbon source L-Arabinose (C) -5.3 -5.8 +0.2 N.D. -0.2
carbon source a-Cyclodextrin (C) -5.3 -5.8 +0.1 N.D. +0.0
carbon source L-Rhamnose (C) -5.2 -3.9 -1.3 N.D. -0.2
carbon source D-Galactose (C) -5.4 -5.7 +0.3 N.D. +0.1
pH Varel_Bryant_medium_Glucose; pH 7 -5.6 -4.3 -0.2 N.D. -0.2
carbon source D-Glucose (C) -5.5 -5.1 +0.4 N.D. -0.1
carbon source NAG (C) -4.6 -5.6 +0.1 N.D. -0.1
carbon source D-Glucose (C) -5.4 -5.0 +0.4 N.D. -0.1
carbon source D-Ribose (C) -4.5 -4.5 -0.8 N.D. -0.3
carbon source D-Arabinose (C) -5.3 -4.7 +0.2 N.D. -0.2
carbon source D-Raffinose (C) -5.0 -5.4 +0.4 N.D. +0.0
carbon source D-Galacturonic Acid (C) -4.6 -5.0 -0.1 N.D. -0.2
carbon source D-Fructose (C) -4.8 -5.2 +0.2 N.D. -0.1
stress Varel_Bryant_medium_Glucose with Bile salts 0.25 mg/mL; pH 6 -4.9 -4.1 -0.4 N.D. -0.3
carbon source D-Maltose (C) -4.0 -5.1 +0.1 N.D. -0.4
stress Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml -5.0 -3.9 +0.1 N.D. -0.5
carbon source Beta-Lactose (C) -4.1 -5.5 +0.6 N.D. -0.2
pH Varel_Bryant_medium_Glucose; pH 7 -4.7 -4.1 -0.1 N.D. -0.1
carbon source Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (~7.5 mM 3-keto-trehalose) 0.5x (C) -4.6 -4.1 -0.2 N.D. -0.1
carbon source L-Fucose (C) -4.0 -4.4 -0.2 N.D. -0.4
carbon source D-Glucose (C) -4.6 -4.4 +0.3 N.D. -0.1
stress Varel_Bryant_medium_Glucose with Bile salts 0.125 mg/mL; pH 6 -4.7 -4.0 +0.1 N.D. -0.2
stress Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml -4.6 -4.1 +0.2 N.D. -0.2
carbon source D-Trehalose (C) -4.2 -4.9 +0.5 N.D. -0.0
stress Varel_Bryant_medium_Glucose with Lithocholic 0.2 mg/ml -4.5 -4.2 +0.3 N.D. -0.1
carbon source NAG (C) -4.8 -4.1 +0.2 N.D. +0.3
carbon source D-Raffinose (C) -4.5 -4.0 +0.2 N.D. +0.1
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