Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT0185 and BT0186 are separated by 9 nucleotidesBT0186 and BT0187 are separated by 95 nucleotidesBT0187 and BT0188 are separated by 192 nucleotidesBT0188 and BT0189 are separated by 87 nucleotides BT0185: BT0185 - conserved hypothetical protein (NCBI ptt file), at 194,876 to 195,175 BT0185 BT0186: BT0186 - thiol:disulfide interchange protein dsbD precursor (NCBI ptt file), at 195,185 to 197,245 BT0186 BT0187: BT0187 - conserved hypothetical protein (NCBI ptt file), at 197,341 to 198,045 BT0187 BT0188: BT0188 - RNA polymerase ECF-type sigma factor (NCBI ptt file), at 198,238 to 198,840 BT0188 BT0189: BT0189 - conserved hypothetical protein, putative anti-sigma factor (NCBI ptt file), at 198,928 to 199,911 BT0189
Group Condition BT0185 BT0186 BT0187 BT0188 BT0189
stress Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml -3.3 N.D. -1.6 -0.1 -0.4
mouse_post_colonization Post-colonization (Day 10) - Cage7;Mouse2 -2.6 N.D. -1.9 -0.8 +0.0
carbon source Lactulose 20mM (C) -3.7 N.D. -0.3 -1.0 -0.0
stress BHIS with Dimethyl Sulfoxide 9 vol% -2.9 N.D. -1.6 -0.6 +0.1
carbon source Fructooligosaccharides (FOS) (C) -2.8 N.D. -1.2 -0.7 -0.3
mouse_post_colonization Post-colonization (Day 8) - Cage1;Mouse5 -3.1 N.D. -1.0 -0.8 -0.1
mouse_post_colonization Post-colonization (Day 6) - Cage3;Mouse4 -3.4 N.D. -1.0 +0.2 -0.4
mouse_post_colonization Post-colonization (Day 1) - Cage5;Mouse1 -3.6 N.D. -0.1 -0.9 +0.2
mouse_post_colonization Post-colonization (Day 10) - Cage6;Mouse1 -3.3 N.D. -0.8 +0.5 +0.6
mouse_post_colonization Post-colonization (Day 12) - Cage5;Mouse3 -2.3 N.D. -1.7 +1.3 -0.2
stress Cobalt chloride 0.5 mM -2.7 N.D. -1.4 +0.7 +0.7
nitrogen source Glucuronamide (N) -2.6 N.D. -1.2 +0.9 +0.3
mouse_post_colonization Post-colonization (Day 12) - Cage1;Mouse3 -3.0 N.D. -0.4 +1.0 +0.3
stress Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 -2.3 N.D. -0.8 +1.5 +0.4
stress Nickel (II) chloride 0.1 mM -2.8 N.D. +0.4 +1.2 +0.2
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen +1.8 N.D. +0.8 -1.6 -0.8
stress BHIS with Cephalothin 0.2 mM -0.8 N.D. +2.6 +1.0 +0.8
stress BHIS with Cefoxitin 0.0125 mM +3.7 N.D. -0.3 +0.5 -0.3
stress BHIS with Trimethoprim 0.00625 mM +2.3 N.D. +2.2 +0.2 +0.2
stress BHIS with Trimethoprim 0.00625 mM +2.3 N.D. +0.2 +1.4 +1.2
stress BHIS with 5-Fluorouracil 0.2 mM +2.5 N.D. +2.1 +0.3 +0.4
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +2.5 N.D. +2.3 +0.7 -0.2
stress BHIS with Thioridazine 0.025 mM +2.1 N.D. +1.8 +1.5 -0.1
stress BHIS with Sulfamonomethoxine 0.2 mM +1.6 N.D. +1.8 +0.9 +1.0
stress BHIS with Trimethoprim 0.0125 mM +2.7 N.D. +1.4 +0.8 +0.5
stress BHIS with Sulfaquinoxaline 0.1 mM +3.0 N.D. +0.9 +1.1 +0.7
stress BHIS with Sulfamonomethoxine 0.2 mM +2.8 N.D. +1.2 +0.9 +0.7
stress BHIS with Thioridazine 0.0125 mM +3.8 N.D. +1.2 +0.4 +0.4
stress BHIS with Sulfamonomethoxine 0.1 mM +3.4 N.D. +0.6 +1.2 +0.6
stress BHIS with 5-Fluorouracil 0.1 mM +3.3 N.D. +1.1 +1.6 +1.0
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