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Protein
Homologs
Fitness for 5 genes in
Bacteroides thetaiotaomicron VPI-5482
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BT0185 and BT0186 are separated by 9 nucleotides
BT0186 and BT0187 are separated by 95 nucleotides
BT0187 and BT0188 are separated by 192 nucleotides
BT0188 and BT0189 are separated by 87 nucleotides
BT0185: BT0185 - conserved hypothetical protein (NCBI ptt file), at 194,876 to 195,175
BT0185
BT0186: BT0186 - thiol:disulfide interchange protein dsbD precursor (NCBI ptt file), at 195,185 to 197,245
BT0186
BT0187: BT0187 - conserved hypothetical protein (NCBI ptt file), at 197,341 to 198,045
BT0187
BT0188: BT0188 - RNA polymerase ECF-type sigma factor (NCBI ptt file), at 198,238 to 198,840
BT0188
BT0189: BT0189 - conserved hypothetical protein, putative anti-sigma factor (NCBI ptt file), at 198,928 to 199,911
BT0189
Group
Condition
BT0185
BT0186
BT0187
BT0188
BT0189
stress
Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml
-3.3
N.D.
-1.6
-0.1
-0.4
mouse_post_colonization
Post-colonization (Day 10) - Cage7;Mouse2
-2.6
N.D.
-1.9
-0.8
+0.0
carbon source
Lactulose 20mM (C)
-3.7
N.D.
-0.3
-1.0
-0.0
stress
BHIS with Dimethyl Sulfoxide 9 vol%
-2.9
N.D.
-1.6
-0.6
+0.1
carbon source
Fructooligosaccharides (FOS) (C)
-2.8
N.D.
-1.2
-0.7
-0.3
mouse_post_colonization
Post-colonization (Day 8) - Cage1;Mouse5
-3.1
N.D.
-1.0
-0.8
-0.1
mouse_post_colonization
Post-colonization (Day 6) - Cage3;Mouse4
-3.4
N.D.
-1.0
+0.2
-0.4
mouse_post_colonization
Post-colonization (Day 1) - Cage5;Mouse1
-3.6
N.D.
-0.1
-0.9
+0.2
mouse_post_colonization
Post-colonization (Day 10) - Cage6;Mouse1
-3.3
N.D.
-0.8
+0.5
+0.6
mouse_post_colonization
Post-colonization (Day 12) - Cage5;Mouse3
-2.3
N.D.
-1.7
+1.3
-0.2
stress
Cobalt chloride 0.5 mM
-2.7
N.D.
-1.4
+0.7
+0.7
nitrogen source
Glucuronamide (N)
-2.6
N.D.
-1.2
+0.9
+0.3
mouse_post_colonization
Post-colonization (Day 12) - Cage1;Mouse3
-3.0
N.D.
-0.4
+1.0
+0.3
stress
Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7
-2.3
N.D.
-0.8
+1.5
+0.4
stress
Nickel (II) chloride 0.1 mM
-2.8
N.D.
+0.4
+1.2
+0.2
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen
+1.8
N.D.
+0.8
-1.6
-0.8
stress
BHIS with Cephalothin 0.2 mM
-0.8
N.D.
+2.6
+1.0
+0.8
stress
BHIS with Cefoxitin 0.0125 mM
+3.7
N.D.
-0.3
+0.5
-0.3
stress
BHIS with Trimethoprim 0.00625 mM
+2.3
N.D.
+2.2
+0.2
+0.2
stress
BHIS with Trimethoprim 0.00625 mM
+2.3
N.D.
+0.2
+1.4
+1.2
stress
BHIS with 5-Fluorouracil 0.2 mM
+2.5
N.D.
+2.1
+0.3
+0.4
nitrogen source
L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
+2.5
N.D.
+2.3
+0.7
-0.2
stress
BHIS with Thioridazine 0.025 mM
+2.1
N.D.
+1.8
+1.5
-0.1
stress
BHIS with Sulfamonomethoxine 0.2 mM
+1.6
N.D.
+1.8
+0.9
+1.0
stress
BHIS with Trimethoprim 0.0125 mM
+2.7
N.D.
+1.4
+0.8
+0.5
stress
BHIS with Sulfaquinoxaline 0.1 mM
+3.0
N.D.
+0.9
+1.1
+0.7
stress
BHIS with Sulfamonomethoxine 0.2 mM
+2.8
N.D.
+1.2
+0.9
+0.7
stress
BHIS with Thioridazine 0.0125 mM
+3.8
N.D.
+1.2
+0.4
+0.4
stress
BHIS with Sulfamonomethoxine 0.1 mM
+3.4
N.D.
+0.6
+1.2
+0.6
stress
BHIS with 5-Fluorouracil 0.1 mM
+3.3
N.D.
+1.1
+1.6
+1.0
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