Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT0103 and BT0104 overlap by 4 nucleotidesBT0104 and BT0105 overlap by 4 nucleotidesBT0105 and BT0106 are separated by 105 nucleotidesBT0106 and BT0107 are separated by 449 nucleotides BT0103: BT0103 - conserved hypothetical protein (NCBI ptt file), at 95,169 to 96,704 BT0103 BT0104: BT0104 - hypothetical protein (NCBI ptt file), at 96,701 to 96,889 BT0104 BT0105: BT0105 - DNA topoisomerase I (Omega-protein) (NCBI ptt file), at 96,886 to 98,967 BT0105 BT0106: BT0106 - conserved hypothetical protein (NCBI ptt file), at 99,073 to 99,519 BT0106 BT0107: BT0107 - conserved hypothetical protein (NCBI ptt file), at 99,969 to 100,247 BT0107
Group Condition BT0103 BT0104 BT0105 BT0106 BT0107
stress Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM -1.1 N.D. +0.1 -0.4 -2.2
phage SJC12_cps8_0.1MOI -0.7 N.D. -0.8 -1.8 -0.2
stress Varel_Bryant_medium_Glucose with Sulfamonomethoxine 0.2 mM -0.9 N.D. -0.0 -1.1 -1.4
phage HNL05_cps7_0.1MOI -0.6 N.D. -1.0 -1.1 -0.6
carbon source Hyaluronic from Streptococcus equi -0.2 N.D. -0.4 -1.6 -1.1
stress BHIS with 5-Fluorouracil 0.1 mM -0.2 N.D. -0.3 -0.9 -1.4
stress Varel_Bryant_medium_Glucose with Trimethoprim 0.025 mM +0.3 N.D. -0.1 -0.8 -2.1
stress BHIS with Trimethoprim 0.0125 mM +0.6 N.D. -0.5 +0.5 -3.3
phage ARB14_cps1_0.1MOI -0.9 N.D. -0.3 -0.4 -1.1
carbon source Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C) -0.3 N.D. -0.4 -0.3 -1.5
carbon source D-Xylose (C) -0.2 N.D. -0.2 -1.3 -0.8
stress Varel_Bryant_medium_Glucose with Ramoplanin 0.003125 mM -0.7 N.D. +0.2 -0.2 -1.4
phage SJC03_cps7_0.1MOI +0.2 N.D. +0.0 -1.1 -1.1
mouse_post_colonization Post-colonization (Day 14) - Cage3;Mouse1 +0.4 N.D. -0.1 -1.5 -0.7
carbon source Hyaluronic from Streptococcus equi -0.5 N.D. -0.9 +0.3 -0.8
carbon source Heparin from porcine intestinal mucosa (C) -0.1 N.D. -0.3 -1.8 +0.4
mouse_post_colonization Post-colonization (Day 2) - Cage2;Mouse1 +0.2 N.D. +0.0 +0.4 -2.4
stress Varel_Bryant_medium_Glucose with Zinc Pyrithione 0.05 mM -0.2 N.D. +0.6 -1.1 -0.6
carbon source Heparin from porcine intestinal mucosa (C) -0.2 N.D. -0.2 -1.4 +0.7
stress Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 -0.3 N.D. +0.1 +0.8 -1.5
mouse_post_colonization Post-colonization (Day 6) - Cage7;Mouse2 -0.7 N.D. +0.3 +0.6 -1.0
stress Varel_Bryant_medium_Glucose with Furaltadone 0.1 mM -0.3 N.D. +0.5 +0.4 -1.4
survival aerobic shaking 48 hr copy B +0.1 N.D. -0.4 -1.3 +0.9
stress BHIS with Ceftazidime 0.5 mg/ml +0.1 N.D. +0.2 -1.8 +1.3
stress BHIS with Oxytetracycline 0.0001953125 mM -0.0 N.D. +0.1 +1.5 -1.4
mouse_post_colonization Post-colonization (Day 10) - Cage6;Mouse2 +0.4 N.D. +0.6 +0.6 -1.3
mouse_post_colonization Post-colonization (Day 10) - Cage3;Mouse4 +0.5 N.D. +0.4 +0.6 -0.9
stress BHIS with Cefoxitin 0.025 mM +1.2 N.D. +0.3 -0.9 +0.1
stress BHIS with Lithocholic 0.4 mg/ml +0.6 N.D. +0.6 +0.3 +1.0
stress BHIS with sodium fluoride 30 mM +0.4 N.D. +0.3 +0.5 +1.3
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