Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT0075 and BT0076 are separated by 460 nucleotidesBT0076 and BT0077 are separated by 76 nucleotidesBT0077 and BT0078 are separated by 258 nucleotidesBT0078 and BT0079 are separated by 298 nucleotides BT0075: BT0075 - conserved hypothetical protein (NCBI ptt file), at 72,433 to 72,723 BT0075 BT0076: BT0076 - transposase (NCBI ptt file), at 73,184 to 74,416 BT0076 BT0077: BT0077 - conserved hypothetical protein (NCBI ptt file), at 74,493 to 74,999 BT0077 BT0078: BT0078 - putative DNA repair protein (NCBI ptt file), at 75,258 to 75,710 BT0078 BT0079: BT0079 - putative anti-restriction protein (NCBI ptt file), at 76,009 to 76,542 BT0079
Group Condition BT0075 BT0076 BT0077 BT0078 BT0079
stress BHIS with Fusidic 0.004 mg/ml N.D. +0.3 -2.8 +0.0 -0.4
carbon source Mannan from Saccharomyces cerevisiae (C) N.D. -0.5 -0.9 -0.0 -1.4
stress BHIS with Cephalothin 0.1 mM N.D. -0.3 -0.7 -0.6 -1.1
carbon source D-Xylose (C) N.D. -0.3 -2.1 -0.1 -0.2
mouse_post_colonization Post-colonization (Day 10) - Cage5;Mouse5 N.D. +0.0 -2.6 +0.2 +0.2
stress Varel_Bryant_medium_Glucose with Sulfamethizole 0.1 mM N.D. -0.0 -1.9 -0.6 +0.4
stress BHIS with Simvastatin 30 uM N.D. -0.1 -1.9 -0.6 +1.0
mouse_post_colonization Post-colonization (Day 8) - Cage7;Mouse2 N.D. -0.0 -1.7 +0.5 -0.3
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. -0.2 +0.6 -0.1 -1.8
carbon source Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C) N.D. -0.4 -1.3 +0.6 -0.4
mouse_post_colonization Post-colonization (Day 14) - Cage3;Mouse1 N.D. +0.5 -1.1 +0.5 -1.4
stress BHIS with Simvastatin 30 uM N.D. -0.5 -2.2 +0.4 +0.9
stress BHIS with Zinc Pyrithione 0.05 mM N.D. -0.1 -2.2 +0.6 +0.3
stress BHIS with Dimethyl Sulfoxide 10 vol% N.D. -0.0 +0.6 -0.5 -1.4
stress BHIS with Lithocholic 0.4 mg/ml N.D. +0.1 -1.3 -0.7 +0.7
carbon source Lactulose 20mM (C) N.D. -0.0 -1.3 -0.6 +0.9
stress BHIS with Rifampicin 0.000048828125 mM N.D. +0.0 -1.8 +0.5 +0.3
stress Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM N.D. +0.2 -1.1 -0.6 +0.6
mouse_post_colonization Post-colonization (Day 6) - Cage3;Mouse4 N.D. +0.3 -1.6 +0.2 +0.5
mouse_post_colonization Post-colonization (Day 2) - Cage1;Mouse3 N.D. -0.6 -0.8 +0.7 +0.5
stress BHIS with Chenodeoxycholic 0.25 mg/ml N.D. +0.2 -0.7 -0.7 +1.0
mouse_post_colonization Post-colonization (Day 10) - Cage6;Mouse2 N.D. +0.4 -1.2 +1.0 -0.0
stress BHIS with DAMPA 60 uM N.D. -0.2 -0.9 +0.0 +1.5
stress BHIS with Cephalothin 0.2 mM N.D. +0.7 -1.1 +0.7 +0.1
stress Varel_Bryant_medium_Glucose with Thioridazine 0.025 mM N.D. +0.1 +1.1 +0.4 -1.2
mouse_post_colonization Post-colonization (Day 1) - Cage2;Mouse2 N.D. -0.5 -0.6 +1.1 +0.7
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. -0.3 +1.8 -0.6 -0.1
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. -0.4 +2.4 -0.1 +0.4
survival aerobic shaking 48 hr copy A N.D. +0.2 +2.0 +0.3 +1.1
survival aerobic shaking 48 hr copy B N.D. -0.3 +2.3 +0.8 +1.7
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