Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT0009 and BT0010 are separated by 54 nucleotidesBT0010 and BT0011 are separated by 205 nucleotidesBT0011 and BT0012 are separated by 59 nucleotidesBT0012 and BT0013 are separated by 31 nucleotides BT0009: BT0009 - phosphate-binding periplasmic protein precursor, putative ABC transporter (NCBI ptt file), at 5,632 to 6,741 BT0009 BT0010: BT0010 - hypothetical protein (NCBI ptt file), at 6,796 to 7,869 BT0010 BT0011: BT0011 - hypothetical protein (NCBI ptt file), at 8,075 to 8,923 BT0011 BT0012: BT0012 - conserved hypothetical protein (NCBI ptt file), at 8,983 to 10,149 BT0012 BT0013: BT0013 - hypothetical protein (NCBI ptt file), at 10,181 to 10,723 BT0013
Group Condition BT0009 BT0010 BT0011 BT0012 BT0013
stress BHIS with Chenodeoxycholic 0.25 mg/ml -0.3 -0.2 -0.9 -0.9 -1.2
stress Varel_Bryant_medium_Glucose with Trimethoprim 0.025 mM -0.7 +0.9 -0.6 +0.1 -2.6
stress BHIS with 2-Mercaptopyridine N-oxide 0.2 mM -0.4 +0.4 -0.3 -0.5 -2.0
stress BHIS with Nitrofurantoin 0.15 mM -0.4 -1.4 +0.4 -0.2 -1.0
stress Varel_Bryant_medium_Glucose with Zinc Pyrithione 0.05 mM +0.1 -1.6 +0.4 +0.5 -1.9
nitrogen source L-Glutamine (N) +0.2 -1.4 +0.4 -0.6 -1.0
stress BHIS with Geneticin G418 0.2 mM -0.3 +0.8 -0.3 -0.6 -1.6
stress Varel_Bryant_medium_Glucose with Thioridazine 0.025 mM +0.3 -1.3 +0.0 +0.3 -1.2
stress BHIS with Irgasan 0.0125 mM -0.2 +0.6 -0.7 +0.3 -1.9
carbon source D-Trehalose 20mM (C) -0.7 -0.5 -0.8 -0.6 +0.7
stress BHIS with Cefoxitin 0.0125 mM -0.4 +0.7 -0.6 -0.3 -1.3
mouse_post_colonization Post-colonization (Day 12) - Cage7;Mouse3 +0.6 -0.7 +0.2 +0.1 -1.7
stress Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM -0.2 +0.3 +0.9 +0.2 -2.4
stress BHIS with Chlorpromazine 0.2 mM -0.3 +0.5 -1.3 +0.8 -0.8
stress Varel_Bryant_medium_Glucose with Ciprofloxacin Hydrochloride 0.025 mM -1.1 +0.9 +0.1 -0.1 -1.0
mouse Post-colonization (Day 7) - Cage1B;Mouse5 +0.7 +0.3 -0.4 +0.2 -1.7
stress BHIS with Zinc Pyrithione 0.0125 mM -0.9 +1.3 -0.3 -0.4 -0.3
stress BHIS with Cephalothin 0.1 mM -1.1 +1.6 -0.7 +0.1 -0.4
stress BHIS with Chlorpromazine 0.2 mM -0.4 +1.6 -0.5 +0.1 -1.0
stress BHIS with Simvastatin 30 uM -0.9 +0.6 -0.5 -0.3 +1.1
stress BHIS with Ceftazidime 0.5 mg/ml -0.4 -0.8 -0.6 +0.7 +1.3
mouse_peg_treatment PEG (Day 1) - Cage4;Mouse1 +0.2 -0.7 -1.0 +0.7 +1.0
nitrogen source L-aspartic (N) -1.4 +0.1 +0.6 -1.0 +2.1
stress Varel_Bryant_medium_Glucose with Geneticin G418 0.2 mM -0.3 +1.1 -0.4 -0.5 +0.9
stress BHIS with Sulfamonomethoxine 0.1 mM -0.3 +1.9 -0.2 +0.6 -1.1
stress BHIS with Simvastatin 30 uM +0.2 +0.7 +0.3 -1.3 +1.5
carbon source Mannan from Saccharomyces cerevisiae (C) -1.0 +0.4 +1.0 -0.0 +1.4
carbon source Mannan from Saccharomyces cerevisiae; autoclaved 2.5 mg/ml (C) -0.5 -0.2 +0.9 +0.1 +1.7
phage HNL05_cps7_1MOI -0.1 +1.7 +0.2 +0.8 +0.3
phage SJC16_cps8_10MOI +0.1 +1.3 +0.1 +0.6 +1.5
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