Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntp5482_04 and p5482_05 are separated by 275 nucleotidesp5482_05 and p5482_06 are separated by 759 nucleotidesp5482_06 and p5482_07 are separated by 4 nucleotidesp5482_07 and p5482_08 are separated by 1 nucleotides p5482_04: p5482_04 - hypothetical protein (NCBI), at 1,785 to 2,471 _04 p5482_05: p5482_05 - putative replication protein B (NCBI), at 2,747 to 3,787 _05 p5482_06: p5482_06 - mobilization protein A (NCBI), at 4,547 to 5,167 _06 p5482_07: p5482_07 - mobilization protein B (NCBI), at 5,172 to 7,421 _07 p5482_08: p5482_08 - mobilization protein C (NCBI), at 7,423 to 8,862 _08
Group Condition p5482_04 p5482_05 p5482_06 p5482_07 p5482_08
stress Varel_Bryant_medium_Glucose with Doxycycline hyclate 0.0001953125 mM +0.4 N.D. -1.4 -1.0 -0.6
stress Varel_Bryant_medium_Glucose with Doxycycline hyclate 0.0001953125 mM +0.0 N.D. -0.7 -1.0 -0.3
stress Varel_Bryant_medium_Glucose with Sulfamethizole 0.1 mM -0.4 N.D. +0.5 +0.3 +0.3
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.4 N.D. +0.8 +0.3 +0.2
carbon source (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) -0.2 N.D. +0.5 +0.6 +0.1
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) -0.1 N.D. +0.7 +0.5 -0.1
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.3 N.D. +0.4 +0.6 +0.4
mouse Post-colonization (Day 2) - Cage1C;Mouse3 +1.1 N.D. +0.2 +0.0 -0.1
mouse Post-colonization (Day 4) - Cage1A;Mouse2 +1.2 N.D. +0.1 -0.0 +0.1
mouse Post-dosage t1 (Day 1) - Cage1C;Mouse1 +1.1 N.D. +0.3 -0.0 +0.0
mouse Post-colonization (Day 2) - Cage1B;Mouse4 +1.2 N.D. +0.2 -0.0 +0.0
mouse_post_colonization Post-colonization (Day 10) - Cage1;Mouse4 +0.6 N.D. +0.4 +0.2 +0.2
mouse Post-colonization (Day 4) - Cage1C;Mouse3 +1.2 N.D. +0.3 -0.0 -0.0
mouse_post_colonization Post-colonization (Day 12) - Cage5;Mouse4 +0.9 N.D. +0.3 +0.2 +0.1
mouse_post_colonization Post-colonization (Day 10) - Cage4;Mouse5 +0.7 N.D. +0.3 +0.3 +0.2
stress BHIS with Oxytetracycline 0.000390625 mM +0.2 N.D. +0.6 +0.3 +0.4
mouse_post_colonization Post-colonization (Day 10) - Cage5;Mouse5 +0.8 N.D. +0.4 +0.2 +0.0
mouse_peg_treatment PEG (Day 1) - Cage3;Mouse1 +0.6 N.D. +0.6 +0.2 +0.1
stress BHIS with Oxytetracycline 0.00078125 mM +0.1 N.D. +0.7 +0.2 +0.4
carbon source D-Fructose 2.5 mg/ml (C) +0.2 N.D. +0.8 +0.6 +0.0
stress BHIS with Dimethyl Sulfoxide 9 vol% +0.6 N.D. +0.4 +0.2 +0.3
stress BHIS with Dimethyl Sulfoxide 10 vol% +0.5 N.D. +0.5 +0.2 +0.4
mouse_post_colonization Post-colonization (Day 10) - Cage6;Mouse2 +0.6 N.D. +0.4 +0.3 +0.2
mouse_peg_treatment PEG (Day 2) - Cage4;Mouse1 +0.7 N.D. +0.7 +0.2 +0.0
mouse_post_colonization Post-colonization (Day 6) - Cage3;Mouse4 +0.6 N.D. +0.6 +0.2 +0.2
mouse_post_colonization Post-colonization (Day 8) - Cage3;Mouse4 +0.7 N.D. +0.5 +0.3 +0.1
mouse_post_colonization Post-colonization (Day 8) - Cage7;Mouse1 +0.7 N.D. +0.7 +0.2 +0.1
stress BHIS with Dimethyl Sulfoxide 10 vol% +0.7 N.D. +0.5 +0.2 +0.3
stress BHIS with Dimethyl Sulfoxide 9 vol% +0.6 N.D. +0.6 +0.3 +0.4
stress BHIS with Fusidic 0.002 mg/ml +0.4 N.D. +0.8 +0.4 +0.3
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