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Fitness for 5 genes in
Rhodospirillum rubrum S1H
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Rru_A3775 and Rru_A3776 are separated by 147 nucleotides
Rru_A3776 and Rru_A3777 overlap by 8 nucleotides
Rru_A3777 and Rru_A3778 are separated by 45 nucleotides
Rru_A3778 and Rru_A3779 are separated by 56 nucleotides
Rru_A3775: Rru_A3775 - Transcriptional Regulator, XRE family (NCBI), at 4,323,959 to 4,324,591
_A3775
Rru_A3776: Rru_A3776 - Methionine adenosyltransferase (NCBI), at 4,324,739 to 4,325,908
_A3776
Rru_A3777: Rru_A3777 - hypothetical protein (NCBI), at 4,325,901 to 4,326,668
_A3777
Rru_A3778: Rru_A3778 - Protein of unknown function DUF150 (NCBI), at 4,326,714 to 4,327,391
_A3778
Rru_A3779: Rru_A3779 - NusA antitermination factor (NCBI), at 4,327,448 to 4,328,998
_A3779
Group
Condition
Rru
_A3775
Rru
_A3776
Rru
_A3777
Rru
_A3778
Rru
_A3779
carbon source
Hexanoic 21 mM; anaerobic
-0.4
N.D.
-1.1
N.D.
N.D.
carbon source
carbon source anaerobic Succinic Acid 31.25 mM
-1.2
N.D.
-0.1
N.D.
N.D.
carbon source
Hexanoic 21 mM; anaerobic
-0.1
N.D.
-0.9
N.D.
N.D.
light
acetate; Light intensity 18 uM
-0.3
N.D.
-0.4
N.D.
N.D.
carbon source
Hexanoic 21 mM; anaerobic
-0.2
N.D.
-0.5
N.D.
N.D.
carbon source
Valeric 25 mM; anaerobic
-0.5
N.D.
+0.0
N.D.
N.D.
anaerboic nitrogen source
L-Malic Acid (C) and N2; anaerobic; high light
-0.1
N.D.
-0.4
N.D.
N.D.
carbon source
Hexanoic 21 mM; anaerobic
-0.3
N.D.
-0.2
N.D.
N.D.
light
Succinic Acid; Light intensity 150 uM
-0.1
N.D.
-0.4
N.D.
N.D.
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
-0.4
N.D.
-0.1
N.D.
N.D.
light
Succinic Acid; Light intensity 18 uM
-0.2
N.D.
-0.2
N.D.
N.D.
anaerboic nitrogen source
L-Malic Acid (C) and N2; anaerobic; high light
+0.1
N.D.
-0.5
N.D.
N.D.
carbon source
Valeric 25 mM; anaerobic
-0.5
N.D.
+0.1
N.D.
N.D.
light
acetate; Light intensity 38 uM
+0.2
N.D.
-0.4
N.D.
N.D.
carbon source
Succinic Acid 31.25 mM; anaerobic
-0.4
N.D.
+0.2
N.D.
N.D.
light
Succinic Acid; Light intensity 75 uM
-0.5
N.D.
+0.3
N.D.
N.D.
carbon source
Succinic Acid 31.25 mM; anaerobic
-0.3
N.D.
+0.4
N.D.
N.D.
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
-0.3
N.D.
+0.3
N.D.
N.D.
light
acetate; Light intensity 75 uM
+0.4
N.D.
-0.2
N.D.
N.D.
light
Succinic Acid; Light intensity 18 uM
-0.3
N.D.
+0.4
N.D.
N.D.
light
acetate; Light intensity 38 uM
+0.6
N.D.
-0.4
N.D.
N.D.
anaerboic nitrogen source
L-Malic Acid (C) and N2; high light
-0.1
N.D.
+0.4
N.D.
N.D.
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
-0.1
N.D.
+0.4
N.D.
N.D.
anaerboic nitrogen source
SMN_rich_anaerobic
+0.1
N.D.
+0.4
N.D.
N.D.
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
+0.1
N.D.
+0.4
N.D.
N.D.
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
+0.4
N.D.
+0.1
N.D.
N.D.
anaerboic nitrogen source
L-Malic Acid (C) and N2; high light
+0.1
N.D.
+0.5
N.D.
N.D.
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
+0.3
N.D.
+0.5
N.D.
N.D.
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
+0.2
N.D.
+0.7
N.D.
N.D.
light
acetate; Light intensity 18 uM
+1.2
N.D.
+0.4
N.D.
N.D.
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