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Fitness for 5 genes in
Rhodospirillum rubrum S1H
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Rru_A3654 and Rru_A3655 are separated by 145 nucleotides
Rru_A3655 and Rru_A3656 are separated by 59 nucleotides
Rru_A3656 and Rru_A3657 are separated by 2 nucleotides
Rru_A3657 and Rru_A3658 are separated by 61 nucleotides
Rru_A3654: Rru_A3654 - Protein of unknown function DUF74 (NCBI), at 4,193,939 to 4,194,274
_A3654
Rru_A3655: Rru_A3655 - Phosphoribosylaminoimidazolecarboxamideformyltransferase (NCBI), at 4,194,420 to 4,196,000
_A3655
Rru_A3656: Rru_A3656 - Polysaccharide biosynthesis protein CapD (NCBI), at 4,196,060 to 4,198,018
_A3656
Rru_A3657: Rru_A3657 - Glycosyl transferase, family 4 (NCBI), at 4,198,021 to 4,199,034
_A3657
Rru_A3658: Rru_A3658 - Glycosyl transferase, group 1 (NCBI), at 4,199,096 to 4,200,256
_A3658
Group
Condition
Rru
_A3654
Rru
_A3655
Rru
_A3656
Rru
_A3657
Rru
_A3658
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
-0.9
N.D.
N.D.
N.D.
N.D.
light
Succinic Acid; Light intensity 18 uM
-0.8
N.D.
N.D.
N.D.
N.D.
carbon source
Succinic Acid 31.25 mM; anaerobic
-0.7
N.D.
N.D.
N.D.
N.D.
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
-0.6
N.D.
N.D.
N.D.
N.D.
carbon source
Hexanoic 21 mM; anaerobic
-0.5
N.D.
N.D.
N.D.
N.D.
carbon source
Valeric 25 mM; anaerobic
-0.5
N.D.
N.D.
N.D.
N.D.
carbon source
Succinic Acid 31.25 mM; anaerobic
-0.4
N.D.
N.D.
N.D.
N.D.
smn_rich
SMN_rich
-0.4
N.D.
N.D.
N.D.
N.D.
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
-0.4
N.D.
N.D.
N.D.
N.D.
carbon source
Hexanoic 21 mM; anaerobic
-0.3
N.D.
N.D.
N.D.
N.D.
light
acetate; Light intensity 18 uM
-0.3
N.D.
N.D.
N.D.
N.D.
light
Succinic Acid; Light intensity 75 uM
-0.2
N.D.
N.D.
N.D.
N.D.
carbon source
Succinic Acid 31.25 mM; anaerobic
+0.2
N.D.
N.D.
N.D.
N.D.
light
Succinic Acid; Light intensity 9 uM
+0.3
N.D.
N.D.
N.D.
N.D.
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
+0.3
N.D.
N.D.
N.D.
N.D.
carbon source
Succinate (C)
+0.3
N.D.
N.D.
N.D.
N.D.
smn_rich
SMN_rich_noKan
+0.3
N.D.
N.D.
N.D.
N.D.
carbon source
Valeric 25 mM; anaerobic
+0.3
N.D.
N.D.
N.D.
N.D.
smn_rich
SMN_rich_noKan
+0.3
N.D.
N.D.
N.D.
N.D.
carbon source
Succinate (C)_noKan
+0.3
N.D.
N.D.
N.D.
N.D.
carbon source
Succinate (C)_noKan
+0.4
N.D.
N.D.
N.D.
N.D.
light
acetate; Light intensity 75 uM
+0.5
N.D.
N.D.
N.D.
N.D.
light
Succinic Acid; Light intensity 18 uM
+0.5
N.D.
N.D.
N.D.
N.D.
light
acetate; Light intensity 38 uM
+0.5
N.D.
N.D.
N.D.
N.D.
carbon source
Succinate (C)_noKan
+0.5
N.D.
N.D.
N.D.
N.D.
light
Succinic Acid; Light intensity 150 uM
+0.6
N.D.
N.D.
N.D.
N.D.
light
acetate; Light intensity 38 uM
+0.8
N.D.
N.D.
N.D.
N.D.
light
acetate; Light intensity 9 uM
+1.1
N.D.
N.D.
N.D.
N.D.
light
Succinic Acid; Light intensity 150 uM
+1.2
N.D.
N.D.
N.D.
N.D.
light
acetate; Light intensity 18 uM
+1.5
N.D.
N.D.
N.D.
N.D.
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