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Fitness for 5 genes in
Rhodospirillum rubrum S1H
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Rru_A3507 and Rru_A3508 are separated by 4 nucleotides
Rru_A3508 and Rru_A3509 are separated by 86 nucleotides
Rru_A3509 and Rru_A3510 overlap by 1 nucleotides
Rru_A3510 and Rru_A3511 are separated by 378 nucleotides
Rru_A3507: Rru_A3507 - inner-membrane translocator (NCBI), at 4,034,527 to 4,035,648
_A3507
Rru_A3508: Rru_A3508 - inner-membrane translocator (NCBI), at 4,035,653 to 4,036,546
_A3508
Rru_A3509: Rru_A3509 - AMP-dependent synthetase and ligase (NCBI), at 4,036,633 to 4,038,600
_A3509
Rru_A3510: Rru_A3510 - ABC transporter component (NCBI), at 4,038,600 to 4,039,424
_A3510
Rru_A3511: Rru_A3511 - Aconitate hydratase 1 (NCBI), at 4,039,803 to 4,042,478
_A3511
Group
Condition
Rru
_A3507
Rru
_A3508
Rru
_A3509
Rru
_A3510
Rru
_A3511
carbon source
Hexanoic 21 mM; anaerobic
-0.3
-0.6
-0.4
+0.1
N.D.
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
-0.5
-0.3
-0.5
+0.1
N.D.
light
Succinic Acid; Light intensity 18 uM
-0.2
-0.5
+0.2
-0.7
N.D.
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
-0.5
-0.4
-0.4
+0.2
N.D.
light
acetate; Light intensity 18 uM
-0.5
-0.4
+0.2
-0.4
N.D.
light
acetate; Light intensity 38 uM
-0.2
-0.4
-0.1
-0.2
N.D.
light
acetate; Light intensity 9 uM
-0.4
-0.3
+0.0
-0.2
N.D.
light
acetate; Light intensity 38 uM
-0.6
+0.5
+0.2
-1.0
N.D.
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
-0.3
-0.2
-0.2
-0.1
N.D.
light
Succinic Acid; Light intensity 75 uM
+0.0
+0.0
-0.0
-0.8
N.D.
light
acetate; Light intensity 75 uM
-0.3
-0.1
+0.1
-0.4
N.D.
carbon source
Hexanoic 21 mM; anaerobic
-0.2
+0.1
-0.3
-0.3
N.D.
anaerboic nitrogen source
L-Malic Acid (C) and N2; high light
-0.2
-0.1
-0.1
-0.2
N.D.
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
-0.2
-0.4
-0.1
+0.2
N.D.
carbon source
Hexanoic 21 mM; anaerobic
-0.2
+0.2
-0.3
-0.2
N.D.
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
-0.4
+0.1
-0.2
+0.0
N.D.
carbon source
Succinic Acid 31.25 mM; anaerobic
-0.2
+0.2
+0.1
-0.4
N.D.
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
-0.3
+0.0
-0.1
+0.3
N.D.
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
-0.4
+0.5
-0.2
+0.0
N.D.
carbon source
Succinic Acid 31.25 mM; anaerobic
+0.2
-0.2
-0.1
+0.2
N.D.
light
Succinic Acid; Light intensity 9 uM
+0.2
+0.3
+0.1
-0.3
N.D.
carbon source
Valeric 25 mM; anaerobic
+0.4
-0.3
+0.2
+0.1
N.D.
carbon source
Succinic Acid 31.25 mM; anaerobic
+0.1
-0.1
-0.0
+0.4
N.D.
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
-0.1
-0.0
+0.0
+0.6
N.D.
carbon source
Hexanoic 21 mM; anaerobic
+0.1
-0.3
+0.1
+0.5
N.D.
light
Succinic Acid; Light intensity 150 uM
-0.0
+1.3
-0.2
-0.5
N.D.
anaerboic nitrogen source
L-Malic Acid (C) and N2; anaerobic; high light
+0.1
+0.1
+0.3
+0.1
N.D.
anaerboic nitrogen source
L-Malic Acid (C) and N2; anaerobic; high light
+0.2
+0.0
+0.3
+0.3
N.D.
carbon source
carbon source anaerobic Succinic Acid 31.25 mM
-0.2
+0.7
-0.2
+0.8
N.D.
light
Succinic Acid; Light intensity 18 uM
+0.3
+0.5
-0.1
+0.3
N.D.
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