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Fitness for 5 genes in
Rhodospirillum rubrum S1H
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500 nt
Rru_A3434 and Rru_A3435 overlap by 4 nucleotides
Rru_A3435 and Rru_A3436 are separated by 64 nucleotides
Rru_A3436 and Rru_A3437 are separated by 38 nucleotides
Rru_A3437 and Rru_A3438 overlap by 4 nucleotides
Rru_A3434: Rru_A3434 - UvrD/REP helicase (NCBI), at 3,952,272 to 3,955,835
_A3434
Rru_A3435: Rru_A3435 - hypothetical protein (NCBI), at 3,955,832 to 3,958,888
_A3435
Rru_A3436: Rru_A3436 - Nucleotidyl transferase (NCBI), at 3,958,953 to 3,959,714
_A3436
Rru_A3437: Rru_A3437 - Aminoglycoside phosphotransferase (NCBI), at 3,959,753 to 3,960,835
_A3437
Rru_A3438: Rru_A3438 - Protein of unknown function UPF0079 (NCBI), at 3,960,832 to 3,961,329
_A3438
Group
Condition
Rru
_A3434
Rru
_A3435
Rru
_A3436
Rru
_A3437
Rru
_A3438
light
acetate; Light intensity 18 uM
N.D.
N.D.
N.D.
-0.9
N.D.
light
acetate; Light intensity 9 uM
N.D.
N.D.
N.D.
-0.8
N.D.
carbon source
Succinic Acid 31.25 mM; anaerobic
N.D.
N.D.
N.D.
-0.7
N.D.
carbon source
Hexanoic 21 mM; anaerobic
N.D.
N.D.
N.D.
-0.6
N.D.
carbon source
Valeric 25 mM; anaerobic
N.D.
N.D.
N.D.
-0.6
N.D.
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
N.D.
N.D.
N.D.
-0.6
N.D.
carbon source
carbon source anaerobic Succinic Acid 31.25 mM
N.D.
N.D.
N.D.
-0.5
N.D.
carbon source
Valeric 25 mM; anaerobic
N.D.
N.D.
N.D.
-0.5
N.D.
light
Succinic Acid; Light intensity 75 uM
N.D.
N.D.
N.D.
-0.4
N.D.
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
N.D.
N.D.
N.D.
-0.4
N.D.
light
acetate; Light intensity 38 uM
N.D.
N.D.
N.D.
-0.4
N.D.
smn_rich
SMN_rich_noKan
N.D.
N.D.
N.D.
-0.4
N.D.
anaerboic nitrogen source
L-Malic Acid (C) and N2; anaerobic; high light
N.D.
N.D.
N.D.
-0.4
N.D.
anaerboic nitrogen source
L-Malic Acid (C) and N2; anaerobic; high light
N.D.
N.D.
N.D.
-0.4
N.D.
carbon source
Valeric 25 mM; anaerobic
N.D.
N.D.
N.D.
-0.4
N.D.
carbon source
Hexanoic 21 mM; anaerobic
N.D.
N.D.
N.D.
-0.3
N.D.
carbon source
Succinate (C)
N.D.
N.D.
N.D.
-0.3
N.D.
light
Succinic Acid; Light intensity 9 uM
N.D.
N.D.
N.D.
-0.3
N.D.
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
N.D.
N.D.
N.D.
-0.3
N.D.
smn_rich
SMN_rich
N.D.
N.D.
N.D.
-0.3
N.D.
anaerboic nitrogen source
L-Malic Acid (C) and N2; high light
N.D.
N.D.
N.D.
-0.3
N.D.
carbon source
Hexanoic 21 mM; anaerobic
N.D.
N.D.
N.D.
-0.3
N.D.
carbon source
Succinic Acid 31.25 mM; anaerobic
N.D.
N.D.
N.D.
-0.3
N.D.
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
N.D.
N.D.
N.D.
-0.2
N.D.
carbon source
Succinate (C)_noKan
N.D.
N.D.
N.D.
-0.2
N.D.
light
Succinic Acid; Light intensity 18 uM
N.D.
N.D.
N.D.
+0.3
N.D.
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
N.D.
N.D.
N.D.
+0.4
N.D.
light
Succinic Acid; Light intensity 150 uM
N.D.
N.D.
N.D.
+0.7
N.D.
light
acetate; Light intensity 38 uM
N.D.
N.D.
N.D.
+0.7
N.D.
light
Succinic Acid; Light intensity 150 uM
N.D.
N.D.
N.D.
+1.5
N.D.
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