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Fitness for 5 genes in
Rhodospirillum rubrum S1H
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Rru_A3382 and Rru_A3383 are separated by 158 nucleotides
Rru_A3383 and Rru_A3384 overlap by 4 nucleotides
Rru_A3384 and Rru_A3385 are separated by 120 nucleotides
Rru_A3385 and Rru_A3386 are separated by 253 nucleotides
Rru_A3382: Rru_A3382 - Cobalamin biosynthesis protein CbiB (NCBI), at 3,898,851 to 3,899,861
_A3382
Rru_A3383: Rru_A3383 - Cobalamin (vitamin B12) biosynthesis CbiG protein (NCBI), at 3,900,020 to 3,901,414
_A3383
Rru_A3384: Rru_A3384 - Precorrin-4 C11-methyltransferase region (NCBI), at 3,901,411 to 3,902,172
_A3384
Rru_A3385: Rru_A3385 - OmpA/MotB (NCBI), at 3,902,293 to 3,903,021
_A3385
Rru_A3386: Rru_A3386 - BioY protein (NCBI), at 3,903,275 to 3,903,823
_A3386
Group
Condition
Rru
_A3382
Rru
_A3383
Rru
_A3384
Rru
_A3385
Rru
_A3386
carbon source
Succinic Acid 31.25 mM; anaerobic
-2.2
-0.5
-3.4
-1.0
-0.5
carbon source
Succinic Acid 31.25 mM; anaerobic
-3.3
-0.0
-3.6
+0.0
+0.0
carbon source
Hexanoic 21 mM; anaerobic
-1.7
-0.0
-1.5
-0.6
-1.5
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
-2.4
+0.2
-3.5
+0.4
+0.1
carbon source
Valeric 25 mM; anaerobic
-1.8
-0.7
-1.4
-0.3
-0.6
anaerboic nitrogen source
L-Malic Acid (C) and N2; anaerobic; high light
-2.8
+0.2
-2.9
+0.4
+0.3
anaerboic nitrogen source
L-Malic Acid (C) and N2; anaerobic; high light
-2.1
+0.2
-2.1
-0.3
-0.3
carbon source
Succinic Acid 31.25 mM; anaerobic
-1.4
+0.1
-2.3
-0.4
-0.5
light
Succinic Acid; Light intensity 18 uM
-0.8
-0.5
-1.8
+0.0
-1.1
carbon source
Valeric 25 mM; anaerobic
-1.1
-0.5
-0.9
-0.7
-0.6
light
Succinic Acid; Light intensity 9 uM
-1.3
-0.1
-1.9
-0.1
-0.2
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
-2.6
+0.3
-1.8
+0.6
-0.0
carbon source
Hexanoic 21 mM; anaerobic
-1.1
-0.1
-0.6
-0.9
-0.7
light
acetate; Light intensity 9 uM
-1.1
+0.4
-2.5
-0.6
+0.5
light
Succinic Acid; Light intensity 9 uM
-0.6
+0.2
-1.2
-0.8
-0.6
carbon source
carbon source anaerobic Succinic Acid 31.25 mM
-2.2
-1.1
-2.2
+1.1
+1.4
carbon source
Succinic Acid 31.25 mM; anaerobic
-1.7
-0.4
-1.1
-0.5
+1.0
carbon source
Hexanoic 21 mM; anaerobic
-0.8
+0.5
-0.9
-0.4
-1.1
light
Succinic Acid; Light intensity 38 uM
-1.2
+0.1
-1.3
+0.2
+0.0
carbon source
Valeric 25 mM; anaerobic
-0.4
+0.8
-0.9
+0.2
-1.7
light
acetate; Light intensity 38 uM
-1.2
+0.3
-1.3
+0.6
-0.4
smn_rich
SMN_rich
-0.8
-0.0
-1.1
+0.5
-0.2
light
Succinic Acid; Light intensity 75 uM
-0.6
+0.2
-1.5
+0.4
+0.2
light
acetate; Light intensity 18 uM
-0.6
+0.7
-1.6
+0.2
+0.5
carbon source
Succinic Acid 31.25 mM; anaerobic
-0.7
-0.2
-0.3
-0.4
+0.8
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
-0.3
-0.4
+0.2
+0.1
+1.8
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
-0.1
-0.4
+0.2
+0.1
+1.9
light
Succinic Acid; Light intensity 150 uM
+1.2
-0.2
-0.3
+1.6
+1.8
light
acetate; Light intensity 38 uM
+1.3
+0.4
+0.3
+0.7
+1.4
light
Succinic Acid; Light intensity 150 uM
+3.0
+0.3
+1.5
+1.8
+2.7
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