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Protein
Homologs
Fitness for 5 genes in
Rhodospirillum rubrum S1H
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Rru_A3305 and Rru_A3306 overlap by 8 nucleotides
Rru_A3306 and Rru_A3307 are separated by 0 nucleotides
Rru_A3307 and Rru_AR0060 are separated by 130 nucleotides
Rru_AR0060 and Rru_AR0061 are separated by 116 nucleotides
Rru_A3305: Rru_A3305 - ABC transporter component (NCBI), at 3,804,260 to 3,804,988
_A3305
Rru_A3306: Rru_A3306 - inner-membrane translocator (NCBI), at 3,804,981 to 3,805,868
_A3306
Rru_A3307: Rru_A3307 - inner-membrane translocator (NCBI), at 3,805,869 to 3,806,813
_A3307
Rru_AR0060: Rru_AR0060 - 5S ribosomal RNA (NCBI), at 3,806,944 to 3,807,058
_AR0060
Rru_AR0061: Rru_AR0061 - 23S ribosomal RNA (NCBI), at 3,807,175 to 3,809,932
_AR0061
Group
Condition
Rru
_A3305
Rru
_A3306
Rru
_A3307
Rru
_AR0060
Rru
_AR0061
light
Succinic Acid; Light intensity 18 uM
-1.1
-0.4
-0.4
N.D.
N.D.
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
-0.5
-0.5
-0.3
N.D.
N.D.
light
Succinic Acid; Light intensity 75 uM
-0.9
-0.1
-0.2
N.D.
N.D.
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
-0.5
-0.3
-0.4
N.D.
N.D.
light
acetate; Light intensity 38 uM
-1.3
+0.3
+0.1
N.D.
N.D.
light
acetate; Light intensity 18 uM
-0.4
-0.0
-0.4
N.D.
N.D.
light
Succinic Acid; Light intensity 9 uM
-0.8
+0.1
-0.1
N.D.
N.D.
carbon source
carbon source anaerobic Succinic Acid 31.25 mM
-0.7
-0.0
-0.1
N.D.
N.D.
light
Succinic Acid; Light intensity 150 uM
-0.5
+0.0
-0.3
N.D.
N.D.
light
acetate; Light intensity 9 uM
-0.7
+0.2
-0.0
N.D.
N.D.
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
-0.1
-0.3
-0.1
N.D.
N.D.
light
Succinic Acid; Light intensity 150 uM
-0.3
+0.0
-0.3
N.D.
N.D.
light
acetate; Light intensity 18 uM
-0.5
+0.1
-0.0
N.D.
N.D.
light
Succinic Acid; Light intensity 9 uM
-0.4
+0.1
-0.1
N.D.
N.D.
carbon source
Hexanoic 21 mM; anaerobic
-0.6
+0.1
+0.0
N.D.
N.D.
light
Succinic Acid; Light intensity 75 uM
-0.4
+0.1
-0.1
N.D.
N.D.
light
acetate; Light intensity 75 uM
-0.6
+0.1
+0.1
N.D.
N.D.
light
acetate; Light intensity 38 uM
-0.4
+0.1
-0.1
N.D.
N.D.
carbon source
Hexanoic 21 mM; anaerobic
-0.6
+0.3
-0.1
N.D.
N.D.
carbon source
Hexanoic 21 mM; anaerobic
-0.4
+0.1
-0.0
N.D.
N.D.
carbon source
Valeric 25 mM; anaerobic
+0.1
-0.2
-0.2
N.D.
N.D.
light
Succinic Acid; Light intensity 38 uM
-0.2
+0.1
-0.2
N.D.
N.D.
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
-0.0
+0.2
-0.4
N.D.
N.D.
carbon source
Valeric 25 mM; anaerobic
-0.2
+0.2
-0.1
N.D.
N.D.
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
+0.1
+0.2
-0.3
N.D.
N.D.
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
+0.2
+0.5
-0.5
N.D.
N.D.
carbon source
Succinic Acid 31.25 mM; anaerobic
-0.1
+0.5
-0.1
N.D.
N.D.
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
+0.3
+0.4
-0.3
N.D.
N.D.
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
+0.3
+0.5
-0.4
N.D.
N.D.
light
Succinic Acid; Light intensity 18 uM
-0.0
+0.5
+0.1
N.D.
N.D.
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