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Fitness for 5 genes in
Rhodospirillum rubrum S1H
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Rru_A3199 and Rru_A3200 are separated by 15 nucleotides
Rru_A3200 and Rru_A3201 overlap by 13 nucleotides
Rru_A3201 and Rru_A3202 are separated by 169 nucleotides
Rru_A3202 and Rru_A3203 are separated by 28 nucleotides
Rru_A3199: Rru_A3199 - extracellular solute-binding protein, family 1 (NCBI), at 3,685,617 to 3,686,633
_A3199
Rru_A3200: Rru_A3200 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 3,686,649 to 3,688,373
_A3200
Rru_A3201: Rru_A3201 - ABC transporter component (NCBI), at 3,688,361 to 3,689,440
_A3201
Rru_A3202: Rru_A3202 - DNA topoisomerase (NCBI), at 3,689,610 to 3,692,357
_A3202
Rru_A3203: Rru_A3203 - ribonuclease R (NCBI), at 3,692,386 to 3,694,914
_A3203
Group
Condition
Rru
_A3199
Rru
_A3200
Rru
_A3201
Rru
_A3202
Rru
_A3203
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
+0.1
-0.0
+0.1
-3.9
-0.2
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
-0.1
+0.0
+0.1
-3.7
-0.1
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
-0.2
+0.4
-0.5
-3.0
-0.3
carbon source
Hexanoic 21 mM; anaerobic
+0.0
+0.0
-0.1
-2.9
-0.6
anaerboic nitrogen source
L-Malic Acid (C) and N2; anaerobic; high light
-0.1
+0.0
-0.1
-3.0
-0.3
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
-0.1
+0.4
-0.4
-3.0
-0.2
carbon source
Hexanoic 21 mM; anaerobic
+0.2
-0.2
-0.4
-2.5
-0.4
carbon source
Hexanoic 21 mM; anaerobic
+0.1
-0.0
-0.0
-3.0
-0.2
carbon source
Hexanoic 21 mM; anaerobic
-0.1
+0.1
+0.1
-2.6
-0.6
anaerboic nitrogen source
L-Malic Acid (C) and N2; anaerobic; high light
-0.2
+0.1
-0.0
-2.6
-0.3
carbon source
carbon source anaerobic Succinic Acid 31.25 mM
-0.1
-0.1
+0.2
-1.3
-1.2
light
acetate; Light intensity 9 uM
-0.0
+0.1
+0.2
-1.6
-1.0
light
acetate; Light intensity 18 uM
-0.2
+0.3
+0.5
-1.7
-1.2
light
acetate; Light intensity 38 uM
-0.0
+0.0
+0.2
-1.8
-0.3
carbon source
Hexanoic 21 mM; anaerobic
+0.1
+0.1
+0.0
-1.6
-0.5
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
-0.1
+0.2
-0.1
-1.8
-0.0
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
+0.0
+0.5
-0.2
-1.8
-0.1
carbon source
Valeric 25 mM; anaerobic
+0.0
-0.3
-0.5
-0.6
-0.1
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
+0.2
+0.1
-0.1
-1.6
-0.0
light
acetate; Light intensity 75 uM
-0.0
+0.1
+0.5
-0.9
-0.9
carbon source
Succinate (C)_noKan
+0.1
+0.1
-0.1
-1.3
+0.1
anaerboic nitrogen source
L-Malic Acid (C) and N2; high light
+0.2
+0.2
-0.0
-1.3
-0.1
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
-0.1
+0.3
+0.1
-1.1
-0.1
anaerboic nitrogen source
L-Malic Acid (C) and N2; high light
+0.2
+0.4
-0.1
-1.2
-0.0
carbon source
Valeric 25 mM; anaerobic
+0.2
-0.1
-0.1
-0.9
+0.2
light
acetate; Light intensity 38 uM
-0.4
+0.5
+0.8
-0.1
-0.6
light
acetate; Light intensity 18 uM
+0.2
-0.1
+0.3
+0.7
-0.2
light
Succinic Acid; Light intensity 75 uM
-0.2
+0.0
+0.2
+1.4
+0.3
carbon source
Succinic Acid 31.25 mM; anaerobic
-0.4
-0.0
+0.3
+1.6
+0.3
light
Succinic Acid; Light intensity 150 uM
-0.1
-0.3
+1.1
+1.2
+0.3
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