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Protein
Homologs
Fitness for 5 genes in
Rhodospirillum rubrum S1H
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Rru_A3088 and Rru_A3089 are separated by 154 nucleotides
Rru_A3089 and Rru_A3090 are separated by 21 nucleotides
Rru_A3090 and Rru_A3091 overlap by 4 nucleotides
Rru_A3091 and Rru_A3092 are separated by 14 nucleotides
Rru_A3088: Rru_A3088 - hypothetical protein (NCBI), at 3,552,944 to 3,553,288
_A3088
Rru_A3089: Rru_A3089 - hypothetical protein (NCBI), at 3,553,443 to 3,553,634
_A3089
Rru_A3090: Rru_A3090 - Glycosyl transferase, family 2 (NCBI), at 3,553,656 to 3,554,588
_A3090
Rru_A3091: Rru_A3091 - Glycosyl transferase, group 1 (NCBI), at 3,554,585 to 3,556,897
_A3091
Rru_A3092: Rru_A3092 - Parallel beta-helix repeat (NCBI), at 3,556,912 to 3,558,387
_A3092
Group
Condition
Rru
_A3088
Rru
_A3089
Rru
_A3090
Rru
_A3091
Rru
_A3092
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
-0.7
-1.0
-0.2
-0.3
-0.1
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
+0.0
-1.0
-0.1
-0.2
-0.0
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
+0.3
-1.0
-0.2
-0.2
-0.0
smn_rich
SMN_rich
+0.0
-0.8
-0.3
+0.1
-0.0
carbon source
Succinate (C)
+0.1
-0.9
-0.0
+0.0
+0.1
carbon source
Valeric 25 mM; anaerobic
-0.9
-0.0
-0.0
+0.3
+0.0
carbon source
Succinic Acid 31.25 mM; anaerobic
-0.5
-0.3
+0.0
+0.3
-0.0
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
+0.2
-0.1
-0.4
-0.2
-0.0
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
-0.2
-0.3
-0.3
-0.0
+0.3
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
+0.4
-0.2
-0.3
-0.2
-0.1
carbon source
Succinate (C)_noKan
-0.1
-0.6
+0.2
+0.0
+0.2
carbon source
Succinate (C)
+0.2
-0.6
+0.2
+0.0
-0.0
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
+0.3
-0.7
-0.1
+0.1
+0.1
light
Succinic Acid; Light intensity 75 uM
-0.4
+0.3
-0.1
-0.1
-0.0
smn_rich
SMN_rich_noKan
+0.3
-0.6
+0.0
+0.1
+0.0
anaerboic nitrogen source
L-Malic Acid (C) and N2; high light
+0.4
-0.1
-0.1
-0.1
-0.2
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
+0.6
-0.5
-0.2
-0.1
+0.1
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
+0.7
-0.4
-0.1
-0.1
-0.1
anaerboic nitrogen source
L-Malic Acid (C) and N2; high light
+0.5
-0.1
-0.1
-0.2
-0.1
carbon source
Succinic Acid 31.25 mM; anaerobic
+0.3
-0.1
-0.3
+0.1
-0.0
light
acetate; Light intensity 18 uM
-0.9
+0.1
+0.6
+0.1
+0.1
light
Succinic Acid; Light intensity 18 uM
-0.8
+1.1
+0.2
-0.7
+0.4
light
acetate; Light intensity 75 uM
-0.2
+0.5
+0.2
-0.2
+0.1
light
Succinic Acid; Light intensity 18 uM
+0.6
-0.8
+0.0
+0.6
-0.1
anaerboic nitrogen source
L-Malic Acid (C) and N2; anaerobic; high light
+0.3
+0.2
-0.2
-0.0
+0.2
carbon source
carbon source anaerobic Succinic Acid 31.25 mM
+0.1
+1.2
+0.2
-1.0
+0.0
light
Succinic Acid; Light intensity 150 uM
+0.3
+0.6
-0.2
+0.1
+0.0
carbon source
Valeric 25 mM; anaerobic
+0.4
+0.4
-0.0
+0.3
-0.1
light
acetate; Light intensity 38 uM
-0.0
+1.2
+0.5
-0.4
+0.5
light
Succinic Acid; Light intensity 150 uM
+0.8
+2.4
+0.1
-0.4
-0.0
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