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Protein
Homologs
Fitness for 5 genes in
Rhodospirillum rubrum S1H
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Rru_A3043 and Rru_A3044 are separated by 77 nucleotides
Rru_A3044 and Rru_A3045 overlap by 4 nucleotides
Rru_A3045 and Rru_A3046 are separated by 99 nucleotides
Rru_A3046 and Rru_A3047 are separated by 132 nucleotides
Rru_A3043: Rru_A3043 - hypothetical protein (NCBI), at 3,507,382 to 3,507,729
_A3043
Rru_A3044: Rru_A3044 - hypothetical protein (NCBI), at 3,507,807 to 3,508,547
_A3044
Rru_A3045: Rru_A3045 - hypothetical protein (NCBI), at 3,508,544 to 3,509,131
_A3045
Rru_A3046: Rru_A3046 - Radical SAM (NCBI), at 3,509,231 to 3,510,112
_A3046
Rru_A3047: Rru_A3047 - hypothetical protein (NCBI), at 3,510,245 to 3,510,682
_A3047
Group
Condition
Rru
_A3043
Rru
_A3044
Rru
_A3045
Rru
_A3046
Rru
_A3047
carbon source
Succinic Acid 31.25 mM; anaerobic
N.D.
-1.2
-0.8
-0.5
+0.1
carbon source
Hexanoic 21 mM; anaerobic
N.D.
-1.1
-0.1
-0.5
+0.2
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
N.D.
-0.8
+0.4
-0.8
+0.0
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
N.D.
-0.6
+0.4
-0.9
+0.0
light
Succinic Acid; Light intensity 18 uM
N.D.
-0.6
+0.1
+0.1
-0.5
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
N.D.
-0.7
-0.1
-0.1
-0.0
carbon source
carbon source anaerobic Succinic Acid 31.25 mM
N.D.
+0.0
+0.0
-0.9
+0.2
carbon source
Valeric 25 mM; anaerobic
N.D.
-0.4
-0.2
-0.3
+0.3
anaerboic nitrogen source
L-Malic Acid (C) and N2; anaerobic; high light
N.D.
-0.1
-0.3
-0.5
+0.3
light
acetate; Light intensity 75 uM
N.D.
-0.3
+0.1
+0.2
-0.3
anaerboic nitrogen source
L-Malic Acid (C) and N2; anaerobic; high light
N.D.
-0.1
-0.1
-0.4
+0.3
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
N.D.
-0.4
+0.1
-0.1
+0.2
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
N.D.
+0.2
+0.2
-0.2
-0.2
carbon source
Succinic Acid 31.25 mM; anaerobic
N.D.
+0.4
+0.1
-0.0
-0.3
smn_rich
SMN_rich_noKan
N.D.
+0.2
+0.1
-0.1
+0.4
light
Succinic Acid; Light intensity 150 uM
N.D.
+0.1
+0.3
+0.3
-0.1
smn_rich
SMN_rich
N.D.
+0.3
+0.1
+0.3
+0.1
carbon source
Valeric 25 mM; anaerobic
N.D.
+0.5
+0.0
+0.1
+0.2
light
Succinic Acid; Light intensity 150 uM
N.D.
+0.3
+0.4
-0.0
+0.2
light
acetate; Light intensity 38 uM
N.D.
+0.2
+0.3
+0.1
+0.2
carbon source
Hexanoic 21 mM; anaerobic
N.D.
+0.5
+0.3
+0.1
-0.0
carbon source
Valeric 25 mM; anaerobic
N.D.
+0.7
+0.0
+0.4
-0.1
light
acetate; Light intensity 38 uM
N.D.
+0.2
+1.1
-0.1
-0.1
light
acetate; Light intensity 18 uM
N.D.
+0.2
+0.1
+0.4
+0.3
carbon source
Succinic Acid 31.25 mM; anaerobic
N.D.
+0.6
+0.0
+0.5
-0.0
light
Succinic Acid; Light intensity 38 uM
N.D.
+0.3
+0.2
+0.5
+0.2
carbon source
Succinic Acid 31.25 mM; anaerobic
N.D.
+0.6
+0.0
+0.4
+0.1
carbon source
Hexanoic 21 mM; anaerobic
N.D.
+0.8
+0.2
+0.2
+0.1
light
Succinic Acid; Light intensity 18 uM
N.D.
+0.8
-0.0
+0.1
+0.5
light
acetate; Light intensity 18 uM
N.D.
+2.1
-0.1
+0.2
-0.1
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