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Fitness for 5 genes in
Rhodospirillum rubrum S1H
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Rru_A2924 and Rru_A2925 are separated by 173 nucleotides
Rru_A2925 and Rru_A2926 overlap by 4 nucleotides
Rru_A2926 and Rru_A2927 are separated by 170 nucleotides
Rru_A2927 and Rru_A2928 are separated by 2 nucleotides
Rru_A2924: Rru_A2924 - Glycosyl transferase, family 2 (NCBI), at 3,366,493 to 3,367,281
_A2924
Rru_A2925: Rru_A2925 - Major facilitator superfamily MFS_1 (NCBI), at 3,367,455 to 3,368,732
_A2925
Rru_A2926: Rru_A2926 - RND efflux system, outer membrane lipoprotein, NodT (NCBI), at 3,368,729 to 3,370,147
_A2926
Rru_A2927: Rru_A2927 - Acriflavin resistance protein (NCBI), at 3,370,318 to 3,373,347
_A2927
Rru_A2928: Rru_A2928 - Secretion protein HlyD (NCBI), at 3,373,350 to 3,374,393
_A2928
Group
Condition
Rru
_A2924
Rru
_A2925
Rru
_A2926
Rru
_A2927
Rru
_A2928
light
Succinic Acid; Light intensity 18 uM
+0.3
+0.4
-1.5
-2.3
-2.2
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
-0.6
-0.0
-0.3
-0.1
-0.7
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
-0.6
-0.3
-0.4
-0.1
-0.3
light
acetate; Light intensity 18 uM
+0.3
+0.2
-0.4
-0.8
-0.5
carbon source
Valeric 25 mM; anaerobic
+0.1
-0.3
-0.1
-0.1
-0.8
anaerboic nitrogen source
L-Malic Acid (C) and N2; anaerobic; high light
-0.2
-0.9
+0.2
-0.1
-0.2
carbon source
Hexanoic 21 mM; anaerobic
+0.4
-0.4
-0.1
-0.2
-0.7
light
Succinic Acid; Light intensity 75 uM
+0.1
+0.1
-0.5
-0.4
-0.2
carbon source
Succinic Acid 31.25 mM; anaerobic
+0.1
-0.7
-0.1
-0.1
-0.2
carbon source
carbon source anaerobic Succinic Acid 31.25 mM
-0.1
+0.4
-0.1
+0.1
-0.9
light
acetate; Light intensity 75 uM
+0.2
+0.2
-0.4
-0.5
-0.0
carbon source
Succinic Acid 31.25 mM; anaerobic
+0.3
-0.1
+0.1
-0.1
-0.7
carbon source
Succinic Acid 31.25 mM; anaerobic
+0.0
-1.2
+0.0
-0.1
+0.7
light
acetate; Light intensity 38 uM
+0.2
+1.0
-0.2
-0.5
-1.0
carbon source
Valeric 25 mM; anaerobic
+0.4
-1.4
-0.0
-0.2
+0.9
carbon source
Hexanoic 21 mM; anaerobic
-0.0
-0.9
-0.1
-0.1
+0.9
light
Succinic Acid; Light intensity 150 uM
-0.5
+2.1
-0.6
-0.9
-0.4
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
+0.3
-0.3
-0.3
-0.1
+0.2
carbon source
Succinic Acid 31.25 mM; anaerobic
+0.1
+0.3
-0.0
-0.1
-0.4
light
Succinic Acid; Light intensity 150 uM
+0.0
+0.6
-0.3
-0.3
+0.0
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
-0.1
-0.2
+0.1
-0.2
+0.6
carbon source
Valeric 25 mM; anaerobic
+0.2
+0.5
+0.2
-0.1
-0.6
carbon source
Hexanoic 21 mM; anaerobic
+0.1
+0.5
+0.3
-0.2
-0.4
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
+0.1
+0.2
-0.2
-0.3
+0.7
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
-0.2
-0.1
+0.1
-0.1
+0.9
anaerboic nitrogen source
L-Malic Acid (C) and N2; high light
-0.0
+0.1
-0.0
-0.1
+0.9
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
+0.4
-0.1
-0.1
-0.1
+1.0
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
-0.1
+0.5
-0.0
+0.0
+0.8
carbon source
Succinic Acid 31.25 mM; anaerobic
+0.4
+0.8
+0.4
-0.0
-0.4
light
Succinic Acid; Light intensity 18 uM
+0.0
+0.0
+1.3
+1.5
+2.1
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Rru_A2926
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