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Homologs
Fitness for 5 genes in
Rhodospirillum rubrum S1H
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Rru_A2892 and Rru_A2893 overlap by 4 nucleotides
Rru_A2893 and Rru_A2894 overlap by 4 nucleotides
Rru_A2894 and Rru_A2895 are separated by 47 nucleotides
Rru_A2895 and Rru_A2896 are separated by 98 nucleotides
Rru_A2892: Rru_A2892 - ABC-3 transporter component (NCBI), at 3,335,282 to 3,336,139
_A2892
Rru_A2893: Rru_A2893 - ABC-3 transporter component (NCBI), at 3,336,136 to 3,336,996
_A2893
Rru_A2894: Rru_A2894 - ABC transporter component (NCBI), at 3,336,993 to 3,337,895
_A2894
Rru_A2895: Rru_A2895 - Twin-arginine translocation pathway signal (NCBI), at 3,337,943 to 3,338,875
_A2895
Rru_A2896: Rru_A2896 - Transcriptional Regulator, AsnC family (NCBI), at 3,338,974 to 3,339,468
_A2896
Group
Condition
Rru
_A2892
Rru
_A2893
Rru
_A2894
Rru
_A2895
Rru
_A2896
carbon source
Succinic Acid 31.25 mM; anaerobic
-0.9
-0.4
-1.8
-0.9
N.D.
light
Succinic Acid; Light intensity 18 uM
+0.0
-1.3
-1.3
-0.6
N.D.
carbon source
carbon source anaerobic Succinic Acid 31.25 mM
-1.0
-0.7
-1.0
-0.4
N.D.
light
Succinic Acid; Light intensity 75 uM
-0.8
-0.2
-1.0
-1.0
N.D.
light
Succinic Acid; Light intensity 9 uM
-0.4
-0.4
-0.5
-1.0
N.D.
light
acetate; Light intensity 18 uM
+0.0
-0.5
-0.9
-0.4
N.D.
light
acetate; Light intensity 9 uM
+0.1
-0.5
-0.9
-0.3
N.D.
smn_rich
SMN_rich
-0.2
-0.2
-0.7
-0.3
N.D.
smn_rich
SMN_rich_noKan
-0.0
-0.9
-0.1
-0.1
N.D.
light
acetate; Light intensity 38 uM
+0.1
-0.7
-0.3
-0.2
N.D.
anaerboic nitrogen source
L-Malic Acid (C) and N2; anaerobic; high light
-0.4
+0.3
-0.1
-0.3
N.D.
light
Succinic Acid; Light intensity 18 uM
-0.8
+0.6
+0.2
-0.4
N.D.
carbon source
Succinate (C)
-0.5
+0.4
-0.2
+0.2
N.D.
anaerboic nitrogen source
SMN_rich_anaerobic
-0.3
+0.4
-0.1
+0.2
N.D.
carbon source
Succinate (C)
-0.4
+0.3
+0.2
+0.2
N.D.
carbon source
Hexanoic 21 mM; anaerobic
+0.1
+0.7
-0.8
+0.3
N.D.
carbon source
Valeric 25 mM; anaerobic
+0.2
-0.3
+0.0
+0.5
N.D.
carbon source
Valeric 25 mM; anaerobic
+0.3
+0.6
-0.5
-0.0
N.D.
carbon source
Succinic Acid 31.25 mM; anaerobic
+0.4
+0.3
-0.1
-0.1
N.D.
light
acetate; Light intensity 38 uM
-0.1
+1.0
-0.7
+0.3
N.D.
carbon source
Succinic Acid 31.25 mM; anaerobic
+0.2
+0.5
-0.1
+0.2
N.D.
carbon source
Valeric 25 mM; anaerobic
+0.3
+0.2
+0.4
+0.1
N.D.
carbon source
Hexanoic 21 mM; anaerobic
+0.5
+0.6
-0.1
+0.1
N.D.
carbon source
Succinate (C)_noKan
-0.0
+0.6
+0.2
+0.2
N.D.
carbon source
Succinic Acid 31.25 mM; anaerobic
+0.5
-0.3
+0.5
+0.4
N.D.
carbon source
Hexanoic 21 mM; anaerobic
+0.5
-0.1
+0.4
+0.4
N.D.
light
Succinic Acid; Light intensity 150 uM
+0.7
+0.6
-0.3
+0.7
N.D.
light
acetate; Light intensity 18 uM
+0.6
+0.8
+0.2
+0.4
N.D.
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
+0.6
+0.7
+0.7
+0.7
N.D.
light
Succinic Acid; Light intensity 150 uM
+0.8
+2.4
+0.3
+0.5
N.D.
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