Fitness for 5 genes in Rhodospirillum rubrum S1H

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500 ntRru_A2401 and Rru_A2402 are separated by 158 nucleotidesRru_A2402 and Rru_A2403 are separated by 0 nucleotidesRru_A2403 and Rru_A2404 are separated by 102 nucleotidesRru_A2404 and Rru_A2405 are separated by 61 nucleotides Rru_A2401: Rru_A2401 - RuBisCO transcriptional regulator cbbR, LysR family (NCBI), at 2,796,032 to 2,796,979 _A2401 Rru_A2402: Rru_A2402 - Ribulose-phosphate 3-epimerase (NCBI), at 2,797,138 to 2,797,824 _A2402 Rru_A2403: Rru_A2403 - Inositol phosphatase/fructose-1,6-bisphosphatase (NCBI), at 2,797,825 to 2,798,934 _A2403 Rru_A2404: Rru_A2404 - Phosphoribulokinase (NCBI), at 2,799,037 to 2,799,915 _A2404 Rru_A2405: Rru_A2405 - transketolase (NCBI), at 2,799,977 to 2,802,025 _A2405
Group Condition Rru_A2401 Rru_A2402 Rru_A2403 Rru_A2404 Rru_A2405
light acetate; Light intensity 18 uM -2.0 N.D. -2.7 -2.6 -2.6
carbon source carbon source anaerobic Succinic Acid 31.25 mM -3.6 N.D. -2.6 -2.4 +0.7
light acetate; Light intensity 9 uM -2.1 N.D. -1.0 -2.0 -1.5
carbon source Succinic Acid 31.25 mM; anaerobic -1.3 N.D. -2.6 -2.5 +0.4
light acetate; Light intensity 38 uM -2.1 N.D. -0.9 -1.5 -1.4
light Succinic Acid; Light intensity 75 uM -1.2 N.D. -2.6 -2.2 +0.2
light Succinic Acid; Light intensity 18 uM -1.5 N.D. -2.6 -2.2 +1.0
carbon source Valeric 25 mM; anaerobic -0.3 N.D. -2.8 -2.5 +0.5
light Succinic Acid; Light intensity 38 uM -1.2 N.D. -2.4 -2.3 +0.9
carbon source Succinic Acid 31.25 mM; anaerobic -1.0 N.D. -2.5 -2.0 +0.8
carbon source Valeric 25 mM; anaerobic -0.1 N.D. -2.3 -2.6 +0.2
carbon source Succinic Acid 31.25 mM; anaerobic -0.6 N.D. -2.2 -1.9 +0.1
carbon source Succinic Acid 31.25 mM; anaerobic -0.1 N.D. -1.8 -2.5 -0.3
carbon source Valeric 25 mM; anaerobic -0.3 N.D. -1.6 -2.3 -0.3
carbon source Succinic Acid 31.25 mM; anaerobic -0.3 N.D. -2.1 -2.1 +0.1
carbon source Valeric 25 mM; anaerobic -0.3 N.D. -2.0 -1.9 -0.1
anaerboic nitrogen source L-Malic Acid (C) with ammonium chloride; high light -0.7 N.D. -1.5 -1.7 -0.3
anaerboic nitrogen source L-Malic Acid (C) with ammonium chloride; high light -0.7 N.D. -1.5 -1.9 -0.2
light Succinic Acid; Light intensity 75 uM -0.4 N.D. -1.9 -1.9 +0.1
light Succinic Acid; Light intensity 9 uM -0.3 N.D. -2.4 -2.1 +0.7
light Succinic Acid; Light intensity 9 uM -0.3 N.D. -2.0 -2.0 +0.3
light acetate; Light intensity 75 uM -0.9 N.D. -0.9 -1.3 -0.9
light Succinic Acid; Light intensity 18 uM -0.2 N.D. -2.0 -1.7 +1.1
anaerboic nitrogen source L-Malic Acid (C) and N2; anaerobic; high light -0.5 N.D. -0.7 -0.8 -0.2
anaerboic nitrogen source L-Malic Acid (C) with ammonium chloride; high light -1.1 N.D. -0.2 -0.5 +0.1
anaerboic nitrogen source L-Malic Acid (C) and N2; anaerobic; high light -0.4 N.D. -0.6 -0.7 -0.1
anaerboic nitrogen source L-Malic Acid (C) with ammonium chloride; high light -0.9 N.D. -0.2 -0.5 -0.0
light Succinic Acid; Light intensity 150 uM +0.4 N.D. -0.7 -0.7 -0.4
carbon source Hexanoic 21 mM; anaerobic -0.0 N.D. -0.8 -0.9 +0.8
carbon source Hexanoic 21 mM; anaerobic +0.5 N.D. +0.5 +0.2 -0.4
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