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Fitness for 5 genes in
Rhodospirillum rubrum S1H
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Rru_A2380 and Rru_A2381 are separated by 47 nucleotides
Rru_A2381 and Rru_A2382 are separated by 39 nucleotides
Rru_A2382 and Rru_A2383 overlap by 4 nucleotides
Rru_A2383 and Rru_A2384 overlap by 1 nucleotides
Rru_A2380: Rru_A2380 - Major facilitator superfamily MFS_1 (NCBI), at 2,772,010 to 2,773,221
_A2380
Rru_A2381: Rru_A2381 - lipocalin-like protein (NCBI), at 2,773,269 to 2,773,874
_A2381
Rru_A2382: Rru_A2382 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 2,773,914 to 2,774,696
_A2382
Rru_A2383: Rru_A2383 - ABC transporter component (NCBI), at 2,774,693 to 2,775,694
_A2383
Rru_A2384: Rru_A2384 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 2,775,694 to 2,776,872
_A2384
Group
Condition
Rru
_A2380
Rru
_A2381
Rru
_A2382
Rru
_A2383
Rru
_A2384
carbon source
Hexanoic 21 mM; anaerobic
-0.7
+0.1
-0.1
-1.0
-0.5
carbon source
Valeric 25 mM; anaerobic
-0.4
-0.1
+0.1
-0.2
-0.4
light
Succinic Acid; Light intensity 75 uM
-0.4
-0.3
-0.3
+0.2
+0.0
carbon source
Succinic Acid 31.25 mM; anaerobic
-0.3
-0.0
+0.2
-0.4
-0.1
light
Succinic Acid; Light intensity 18 uM
+0.0
+0.3
-1.1
-0.0
+0.2
carbon source
Succinic Acid 31.25 mM; anaerobic
+0.0
-0.4
-0.3
+0.7
-0.5
light
Succinic Acid; Light intensity 18 uM
-0.5
-0.5
+0.9
-0.1
+0.1
carbon source
Hexanoic 21 mM; anaerobic
+0.1
+0.2
-0.6
+0.2
-0.1
carbon source
Succinic Acid 31.25 mM; anaerobic
-0.4
-0.2
-0.0
+0.5
+0.1
light
Succinic Acid; Light intensity 150 uM
-0.6
-0.3
-0.3
+0.8
+0.4
light
acetate; Light intensity 38 uM
+0.2
+0.3
-0.4
-0.3
+0.1
light
acetate; Light intensity 18 uM
-0.0
+0.4
+0.7
-0.9
-0.2
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
+0.5
+0.2
-0.3
-0.2
-0.0
carbon source
Valeric 25 mM; anaerobic
+0.2
+0.0
-0.4
+0.5
-0.0
carbon source
Valeric 25 mM; anaerobic
+0.1
-0.1
-0.1
+0.7
-0.1
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
+0.2
+0.2
-0.4
+0.3
+0.3
light
acetate; Light intensity 75 uM
+0.1
-0.0
-0.2
+0.7
-0.0
carbon source
Succinic Acid 31.25 mM; anaerobic
+0.2
-0.1
+0.4
+0.4
-0.3
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
+0.2
+0.2
-0.3
+0.2
+0.3
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
+0.5
+0.3
-0.2
-0.1
+0.1
light
Succinic Acid; Light intensity 150 uM
-0.4
-0.1
+0.1
+0.5
+0.5
carbon source
Hexanoic 21 mM; anaerobic
-0.1
+0.2
+0.2
+0.6
-0.2
carbon source
Valeric 25 mM; anaerobic
+0.3
-0.1
+0.3
+0.6
-0.2
anaerboic nitrogen source
SMN_rich_anaerobic
+0.5
+0.1
+0.7
+0.5
+0.1
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
+0.7
+0.5
+0.4
+0.4
+0.5
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
+0.6
+0.7
+0.6
+0.8
-0.1
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
+0.7
+0.6
+0.4
+1.0
-0.0
anaerboic nitrogen source
L-Malic Acid (C) and N2; high light
+0.9
+0.5
+0.5
+0.6
+0.2
anaerboic nitrogen source
L-Malic Acid (C) and N2; high light
+0.8
+0.6
+0.6
+0.7
+0.3
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
+0.7
+0.7
+0.6
+0.8
+0.2
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