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Fitness for 5 genes in
Rhodospirillum rubrum S1H
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Rru_A1902 and Rru_A1903 are separated by 52 nucleotides
Rru_A1903 and Rru_A1904 are separated by 1 nucleotides
Rru_A1904 and Rru_A1905 overlap by 4 nucleotides
Rru_A1905 and Rru_A1906 are separated by 385 nucleotides
Rru_A1902: Rru_A1902 - Basic membrane lipoprotein (NCBI), at 2,204,594 to 2,205,673
_A1902
Rru_A1903: Rru_A1903 - inner-membrane translocator (NCBI), at 2,205,726 to 2,206,652
_A1903
Rru_A1904: Rru_A1904 - inner-membrane translocator (NCBI), at 2,206,654 to 2,207,748
_A1904
Rru_A1905: Rru_A1905 - ABC transporter component (NCBI), at 2,207,745 to 2,209,337
_A1905
Rru_A1906: Rru_A1906 - Sulfate transporter/antisigma-factor antagonist (NCBI), at 2,209,723 to 2,211,411
_A1906
Group
Condition
Rru
_A1902
Rru
_A1903
Rru
_A1904
Rru
_A1905
Rru
_A1906
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
-0.2
-0.2
-0.0
+0.1
-0.2
light
acetate; Light intensity 18 uM
+0.0
-0.2
-0.3
+0.0
+0.0
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
-0.1
-0.3
-0.1
-0.0
+0.1
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
-0.2
-0.2
+0.0
+0.1
-0.0
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
-0.1
-0.2
-0.1
+0.0
+0.1
carbon source
Hexanoic 21 mM; anaerobic
-0.0
-0.2
+0.2
-0.0
+0.0
carbon source
Valeric 25 mM; anaerobic
+0.1
-0.1
+0.2
-0.0
-0.1
light
Succinic Acid; Light intensity 150 uM
+0.2
+0.1
+0.1
-0.2
-0.1
light
Succinic Acid; Light intensity 150 uM
+0.2
-0.2
+0.1
+0.2
-0.3
carbon source
Succinic Acid 31.25 mM; anaerobic
+0.1
-0.0
+0.1
+0.2
-0.2
carbon source
Hexanoic 21 mM; anaerobic
+0.0
-0.0
-0.1
-0.1
+0.4
light
acetate; Light intensity 18 uM
+0.3
+0.0
-0.2
-0.1
+0.1
smn_rich
SMN_rich
-0.1
+0.1
+0.2
+0.1
-0.0
carbon source
Succinic Acid 31.25 mM; anaerobic
-0.0
+0.1
+0.2
+0.1
-0.1
carbon source
Succinic Acid 31.25 mM; anaerobic
+0.2
-0.1
+0.2
+0.0
-0.1
light
Succinic Acid; Light intensity 18 uM
+0.1
+0.0
+0.1
+0.3
-0.2
anaerboic nitrogen source
L-Malic Acid (C) and N2; high light
+0.1
-0.2
+0.1
+0.2
+0.1
light
acetate; Light intensity 9 uM
+0.2
+0.1
+0.1
-0.0
+0.1
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
-0.0
+0.1
+0.3
+0.1
+0.0
carbon source
Valeric 25 mM; anaerobic
-0.0
+0.0
+0.1
+0.0
+0.4
light
Succinic Acid; Light intensity 38 uM
+0.2
-0.0
+0.2
+0.2
+0.0
carbon source
Succinic Acid 31.25 mM; anaerobic
+0.1
+0.1
+0.0
+0.0
+0.4
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
+0.2
+0.0
+0.1
+0.1
+0.1
carbon source
Succinic Acid 31.25 mM; anaerobic
+0.2
+0.1
+0.3
+0.0
+0.1
light
Succinic Acid; Light intensity 9 uM
+0.3
+0.1
+0.3
+0.2
-0.1
light
Succinic Acid; Light intensity 9 uM
+0.2
+0.1
+0.2
+0.3
+0.0
light
Succinic Acid; Light intensity 75 uM
+0.2
+0.1
+0.5
+0.3
-0.1
carbon source
carbon source anaerobic Succinic Acid 31.25 mM
+0.1
+0.0
+0.5
+0.4
-0.2
light
Succinic Acid; Light intensity 75 uM
+0.4
+0.2
+0.2
+0.4
-0.0
light
Succinic Acid; Light intensity 18 uM
+0.4
+0.4
+0.9
+0.5
-0.0
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