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Fitness for 5 genes in
Rhodospirillum rubrum S1H
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Rru_A1768 and Rru_A1769 are separated by 25 nucleotides
Rru_A1769 and Rru_A1770 overlap by 1 nucleotides
Rru_A1770 and Rru_A1771 are separated by 89 nucleotides
Rru_A1771 and Rru_A1772 are separated by 45 nucleotides
Rru_A1768: Rru_A1768 - Protein-L-isoaspartate(D-aspartate) O-methyltransferase (NCBI), at 2,060,816 to 2,061,475
_A1768
Rru_A1769: Rru_A1769 - Acid phosphatase (NCBI), at 2,061,501 to 2,062,286
_A1769
Rru_A1770: Rru_A1770 - Serine--tRNA ligase (NCBI), at 2,062,286 to 2,063,557
_A1770
Rru_A1771: Rru_A1771 - Sec-independent periplasmic protein translocase (NCBI), at 2,063,647 to 2,064,618
_A1771
Rru_A1772: Rru_A1772 - Twin-arginine translocation protein TatB (NCBI), at 2,064,664 to 2,065,116
_A1772
Group
Condition
Rru
_A1768
Rru
_A1769
Rru
_A1770
Rru
_A1771
Rru
_A1772
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
+0.1
N.D.
N.D.
-3.7
N.D.
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
+0.5
N.D.
N.D.
-3.7
N.D.
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
-0.1
N.D.
N.D.
-2.2
N.D.
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
+0.3
N.D.
N.D.
-1.9
N.D.
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
-0.4
N.D.
N.D.
-1.0
N.D.
light
Succinic Acid; Light intensity 150 uM
+0.7
N.D.
N.D.
-2.0
N.D.
carbon source
Succinate (C)
-0.6
N.D.
N.D.
-0.7
N.D.
carbon source
Valeric 25 mM; anaerobic
+0.1
N.D.
N.D.
-1.1
N.D.
anaerboic nitrogen source
SMN_rich_anaerobic
+0.1
N.D.
N.D.
-1.0
N.D.
smn_rich
SMN_rich_noKan
-0.8
N.D.
N.D.
-0.2
N.D.
anaerboic nitrogen source
L-Malic Acid (C) and N2; anaerobic; high light
+0.4
N.D.
N.D.
-1.0
N.D.
light
acetate; Light intensity 18 uM
+1.2
N.D.
N.D.
-1.6
N.D.
carbon source
Succinic Acid 31.25 mM; anaerobic
+0.4
N.D.
N.D.
-0.8
N.D.
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
-0.6
N.D.
N.D.
+0.5
N.D.
light
Succinic Acid; Light intensity 38 uM
+0.8
N.D.
N.D.
-0.9
N.D.
anaerboic nitrogen source
L-Malic Acid (C) and N2; high light
+0.5
N.D.
N.D.
-0.6
N.D.
light
Succinic Acid; Light intensity 18 uM
+1.2
N.D.
N.D.
-1.1
N.D.
light
acetate; Light intensity 9 uM
+1.0
N.D.
N.D.
-0.8
N.D.
light
acetate; Light intensity 38 uM
+0.6
N.D.
N.D.
-0.4
N.D.
light
acetate; Light intensity 38 uM
+1.0
N.D.
N.D.
-0.7
N.D.
light
acetate; Light intensity 75 uM
+1.4
N.D.
N.D.
-0.7
N.D.
carbon source
Valeric 25 mM; anaerobic
-0.1
N.D.
N.D.
+0.9
N.D.
light
Succinic Acid; Light intensity 9 uM
+1.1
N.D.
N.D.
-0.1
N.D.
light
Succinic Acid; Light intensity 75 uM
+1.1
N.D.
N.D.
-0.0
N.D.
carbon source
Succinic Acid 31.25 mM; anaerobic
+0.3
N.D.
N.D.
+0.8
N.D.
carbon source
Hexanoic 21 mM; anaerobic
+0.4
N.D.
N.D.
+0.8
N.D.
light
Succinic Acid; Light intensity 75 uM
+0.9
N.D.
N.D.
+0.8
N.D.
light
Succinic Acid; Light intensity 9 uM
+1.1
N.D.
N.D.
+0.6
N.D.
light
Succinic Acid; Light intensity 18 uM
+1.0
N.D.
N.D.
+1.9
N.D.
carbon source
carbon source anaerobic Succinic Acid 31.25 mM
+4.9
N.D.
N.D.
-0.8
N.D.
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