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Protein
Homologs
Fitness for 5 genes in
Rhodospirillum rubrum S1H
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Rru_A1513 and Rru_A1515 are separated by 2555 nucleotides
Rru_A1515 and Rru_A1516 overlap by 4 nucleotides
Rru_A1516 and Rru_A1517 are separated by 261 nucleotides
Rru_A1517 and Rru_A1518 are separated by 6 nucleotides
Rru_A1513: Rru_A1513 - hypothetical protein (NCBI), at 1,786,312 to 1,786,719
_A1513
Rru_A1515: Rru_A1515 - Transposase, IS4 (NCBI), at 1,789,275 to 1,789,652
_A1515
Rru_A1516: Rru_A1516 - Transposase and inactivated derivatives-like (NCBI), at 1,789,649 to 1,790,116
_A1516
Rru_A1517: Rru_A1517 - transposase of ISBst12-like element (NCBI), at 1,790,378 to 1,791,094
_A1517
Rru_A1518: Rru_A1518 - hypothetical protein (NCBI), at 1,791,101 to 1,791,517
_A1518
Group
Condition
Rru
_A1513
Rru
_A1515
Rru
_A1516
Rru
_A1517
Rru
_A1518
light
acetate; Light intensity 75 uM
-0.8
-0.2
-0.4
-0.6
-0.9
carbon source
carbon source anaerobic Succinic Acid 31.25 mM
+0.5
-0.2
-0.5
-0.1
-1.6
light
acetate; Light intensity 18 uM
+0.0
-0.5
-0.6
-0.4
-0.6
light
Succinic Acid; Light intensity 18 uM
-0.4
+0.4
-0.7
-0.7
-0.4
light
acetate; Light intensity 38 uM
-0.3
-0.2
-0.3
-0.5
-0.4
light
acetate; Light intensity 18 uM
-0.5
-0.0
-0.3
-0.4
-0.4
light
Succinic Acid; Light intensity 150 uM
-0.6
-0.7
-0.1
-0.2
+0.2
carbon source
Succinic Acid 31.25 mM; anaerobic
-0.2
-0.3
-0.0
+0.1
-0.9
light
acetate; Light intensity 9 uM
-0.5
+0.1
-0.1
-0.5
-0.3
carbon source
Hexanoic 21 mM; anaerobic
+0.1
-0.2
-0.3
-0.3
-0.5
light
acetate; Light intensity 38 uM
-0.8
-0.9
+0.7
-0.3
+0.4
carbon source
Succinic Acid 31.25 mM; anaerobic
-0.6
-0.2
+0.1
-0.5
+0.4
light
Succinic Acid; Light intensity 75 uM
-0.2
-0.4
-0.5
-0.6
+0.8
carbon source
Hexanoic 21 mM; anaerobic
+0.0
-0.4
+0.2
+0.3
-0.9
carbon source
Succinic Acid 31.25 mM; anaerobic
+0.2
-0.0
-0.6
-1.1
+0.9
carbon source
Hexanoic 21 mM; anaerobic
-0.1
-0.1
+0.2
+0.4
-1.1
anaerboic nitrogen source
L-Malic Acid (C) and N2; anaerobic; high light
-0.5
-0.1
+0.0
-0.3
+0.4
light
Succinic Acid; Light intensity 150 uM
+0.5
-0.2
+0.2
-0.2
-0.5
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
+0.7
-1.1
+0.7
-0.1
-0.5
anaerboic nitrogen source
SMN_rich_anaerobic
-0.4
+0.0
+0.2
-0.4
+0.5
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
-1.0
+0.0
+0.0
+0.5
+0.3
carbon source
Succinate (C)_noKan
-0.3
+0.1
-0.1
-0.3
+0.5
carbon source
Hexanoic 21 mM; anaerobic
+0.8
+0.0
-0.5
-0.9
+0.7
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
-0.1
+0.6
+0.3
+0.2
-0.8
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
+0.4
-0.7
+0.7
-0.1
-0.1
light
Succinic Acid; Light intensity 9 uM
-0.4
-0.0
+0.0
-0.2
+0.9
carbon source
Valeric 25 mM; anaerobic
+0.3
+0.1
-0.3
-1.1
+1.3
carbon source
Succinic Acid 31.25 mM; anaerobic
-0.3
+0.3
+0.2
+0.8
-0.5
carbon source
Valeric 25 mM; anaerobic
-0.2
-0.2
+0.2
+0.6
+0.2
light
Succinic Acid; Light intensity 18 uM
+0.4
-0.7
+0.4
+0.2
+0.9
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