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Fitness for 5 genes in
Rhodospirillum rubrum S1H
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Rru_A1488 and Rru_A1489 are separated by 81 nucleotides
Rru_A1489 and Rru_A1490 overlap by 1 nucleotides
Rru_A1490 and Rru_A1491 overlap by 11 nucleotides
Rru_A1491 and Rru_A1492 overlap by 16 nucleotides
Rru_A1488: Rru_A1488 - Metallophosphoesterase (NCBI), at 1,756,646 to 1,757,446
_A1488
Rru_A1489: Rru_A1489 - hypothetical protein (NCBI), at 1,757,528 to 1,758,883
_A1489
Rru_A1490: Rru_A1490 - Protein-tyrosine kinase (NCBI), at 1,758,883 to 1,761,087
_A1490
Rru_A1491: Rru_A1491 - hypothetical protein (NCBI), at 1,761,077 to 1,761,784
_A1491
Rru_A1492: Rru_A1492 - hypothetical protein (NCBI), at 1,761,769 to 1,763,175
_A1492
Group
Condition
Rru
_A1488
Rru
_A1489
Rru
_A1490
Rru
_A1491
Rru
_A1492
carbon source
carbon source anaerobic Succinic Acid 31.25 mM
-0.1
+0.3
+0.4
-2.2
-0.2
light
Succinic Acid; Light intensity 18 uM
-0.2
+0.4
-0.0
-1.5
-0.2
light
acetate; Light intensity 38 uM
-0.5
+0.1
+0.2
-1.1
+0.3
light
Succinic Acid; Light intensity 9 uM
-0.4
+0.2
+0.2
-1.0
+0.1
light
acetate; Light intensity 18 uM
-0.2
+0.3
+0.4
-0.9
+0.0
light
Succinic Acid; Light intensity 150 uM
+0.1
+0.1
+0.2
-0.7
+0.1
carbon source
Hexanoic 21 mM; anaerobic
-0.1
-0.2
+0.3
-0.3
+0.1
carbon source
Valeric 25 mM; anaerobic
-0.3
-0.2
-0.3
+0.8
+0.0
light
acetate; Light intensity 9 uM
+0.1
+0.1
+0.3
-0.5
+0.1
carbon source
Succinic Acid 31.25 mM; anaerobic
-0.1
-0.2
-0.3
+0.8
-0.1
carbon source
Hexanoic 21 mM; anaerobic
+0.1
-0.3
-0.4
+1.0
+0.0
light
acetate; Light intensity 38 uM
+0.4
+0.3
+0.4
-0.8
+0.1
carbon source
Valeric 25 mM; anaerobic
-0.4
+0.0
+0.2
+0.9
-0.2
light
Succinic Acid; Light intensity 38 uM
-0.2
+0.0
+0.1
+0.6
+0.0
carbon source
Hexanoic 21 mM; anaerobic
-0.3
+0.1
+0.3
+0.8
-0.2
carbon source
Succinic Acid 31.25 mM; anaerobic
+0.3
+0.2
-0.3
+0.3
+0.1
carbon source
Succinic Acid 31.25 mM; anaerobic
+0.1
-0.0
-0.0
+0.9
-0.2
light
acetate; Light intensity 18 uM
-0.0
-0.0
+0.0
+0.9
-0.1
anaerboic nitrogen source
L-Malic Acid (C) and N2; anaerobic; high light
-0.3
+0.4
+0.0
+0.5
+0.2
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
+0.9
-0.3
+0.0
+0.1
+0.4
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
+0.4
+0.1
+0.3
+0.0
+0.3
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
+0.9
-0.2
-0.0
+0.1
+0.5
anaerboic nitrogen source
SMN_rich_anaerobic
+0.3
+0.2
+0.5
-0.0
+0.3
light
Succinic Acid; Light intensity 9 uM
+0.2
+0.1
+0.2
+0.8
+0.1
anaerboic nitrogen source
L-Malic Acid (C) and N2; anaerobic; high light
-0.1
+0.4
+0.1
+0.6
+0.4
light
Succinic Acid; Light intensity 150 uM
+1.6
+0.2
+0.2
-0.1
+0.1
light
Succinic Acid; Light intensity 18 uM
-0.1
-0.1
+0.3
+2.2
+0.3
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
+0.9
+1.1
+1.1
+0.2
+1.0
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
+1.3
+1.0
+0.9
+0.1
+1.0
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
+0.9
+1.3
+0.7
+0.8
+1.0
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