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Fitness for 5 genes in
Rhodospirillum rubrum S1H
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Rru_A1309 and Rru_A1310 are separated by 13 nucleotides
Rru_A1310 and Rru_A1311 are separated by 52 nucleotides
Rru_A1311 and Rru_A1312 are separated by 130 nucleotides
Rru_A1312 and Rru_A1313 are separated by 88 nucleotides
Rru_A1309: Rru_A1309 - acetoacetyl-CoA reductase (NCBI), at 1,544,051 to 1,546,375
_A1309
Rru_A1310: Rru_A1310 - Acetyl-CoA C-acyltransferase (NCBI), at 1,546,389 to 1,547,531
_A1310
Rru_A1311: Rru_A1311 - Transcriptional Regulator, MerR family (NCBI), at 1,547,584 to 1,547,982
_A1311
Rru_A1312: Rru_A1312 - AMP-dependent synthetase and ligase (NCBI), at 1,548,113 to 1,549,807
_A1312
Rru_A1313: Rru_A1313 - Membrane protein involved in aromatic hydrocarbon degradation (NCBI), at 1,549,896 to 1,551,185
_A1313
Group
Condition
Rru
_A1309
Rru
_A1310
Rru
_A1311
Rru
_A1312
Rru
_A1313
carbon source
Hexanoic 21 mM; anaerobic
-2.2
-1.8
-1.5
-1.3
-0.3
carbon source
Hexanoic 21 mM; anaerobic
-2.2
-1.6
-0.8
-1.3
-0.3
carbon source
Hexanoic 21 mM; anaerobic
-1.7
-1.7
-0.5
-1.1
-0.6
carbon source
Hexanoic 21 mM; anaerobic
-1.5
-1.5
-1.5
-0.8
-0.2
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
-1.9
-1.7
-0.9
-0.5
-0.2
carbon source
Hexanoic 21 mM; anaerobic
-2.1
-0.8
-0.4
-1.0
-0.4
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
-1.6
-1.8
-0.8
-0.4
-0.1
light
Succinic Acid; Light intensity 18 uM
-1.5
-1.9
-1.1
-0.3
+0.5
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
-1.7
-1.5
-0.4
-0.5
+0.1
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
-1.7
-1.4
-0.4
-0.6
+0.2
light
Succinic Acid; Light intensity 9 uM
-1.1
-0.9
-0.6
-0.6
-0.6
carbon source
Valeric 25 mM; anaerobic
-1.1
-0.7
-1.0
-0.3
-0.3
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
-1.2
-1.1
-0.3
-0.6
-0.2
light
Succinic Acid; Light intensity 75 uM
-1.0
-1.0
-0.4
-0.4
-0.5
carbon source
Valeric 25 mM; anaerobic
-1.2
-0.6
-0.4
-0.3
-0.5
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
-1.1
-1.0
-0.2
-0.5
-0.1
anaerboic nitrogen source
L-Malic Acid (C) and N2; anaerobic; high light
-1.2
-0.7
-0.5
-0.2
+0.1
light
Succinic Acid; Light intensity 75 uM
-0.3
-0.9
-0.5
-0.4
-0.2
carbon source
Valeric 25 mM; anaerobic
-0.5
-1.0
+0.2
-0.5
-0.5
anaerboic nitrogen source
L-Malic Acid (C) and N2; anaerobic; high light
-1.0
-0.8
-0.3
-0.3
+0.1
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
-0.3
-0.9
-0.4
-0.4
-0.1
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
-0.8
-1.3
+0.8
-0.4
-0.2
anaerboic nitrogen source
L-Malic Acid (C) and N2; high light
-0.5
-0.8
-0.5
-0.2
+0.2
carbon source
Valeric 25 mM; anaerobic
-1.2
-0.0
+0.3
-0.5
-0.4
light
acetate; Light intensity 38 uM
+0.8
-0.4
-0.6
-0.3
-0.3
light
acetate; Light intensity 75 uM
+1.3
-1.1
-0.6
-0.3
-0.0
light
Succinic Acid; Light intensity 150 uM
+2.1
+0.1
-1.1
+0.2
-0.7
light
acetate; Light intensity 18 uM
+1.1
-0.5
-0.2
+0.3
+0.0
carbon source
carbon source anaerobic Succinic Acid 31.25 mM
+0.6
+0.2
-1.8
+0.6
+1.8
light
Succinic Acid; Light intensity 150 uM
+2.5
+0.3
-0.2
-0.1
-0.4
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