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Fitness for 5 genes in
Rhodospirillum rubrum S1H
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Rru_A1009 and Rru_A1010 are separated by 358 nucleotides
Rru_A1010 and Rru_A1011 are separated by 120 nucleotides
Rru_A1011 and Rru_A1012 are separated by 37 nucleotides
Rru_A1012 and Rru_A1013 are separated by 193 nucleotides
Rru_A1009: Rru_A1009 - NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase (NCBI), at 1,195,765 to 1,196,640
_A1009
Rru_A1010: Rru_A1010 - Nitrogenase iron protein (NCBI), at 1,196,999 to 1,197,886
_A1010
Rru_A1011: Rru_A1011 - Nitrogenase molybdenum-iron protein alpha chain (NCBI), at 1,198,007 to 1,199,470
_A1011
Rru_A1012: Rru_A1012 - Nitrogenase molybdenum-iron protein beta chain (NCBI), at 1,199,508 to 1,201,040
_A1012
Rru_A1013: Rru_A1013 - ABC transporter component (NCBI), at 1,201,234 to 1,203,066
_A1013
Group
Condition
Rru
_A1009
Rru
_A1010
Rru
_A1011
Rru
_A1012
Rru
_A1013
anaerboic nitrogen source
L-Malic Acid (C) and N2; anaerobic; high light
-0.2
-2.9
-2.8
-3.3
+0.5
anaerboic nitrogen source
L-Malic Acid (C) and N2; anaerobic; high light
-0.2
-2.7
-3.0
-3.0
+0.5
anaerboic nitrogen source
L-Malic Acid (C) and N2; high light
-0.2
-0.9
-1.1
-1.0
+0.1
anaerboic nitrogen source
L-Malic Acid (C) and N2; high light
-0.2
-0.9
-1.1
-1.0
+0.1
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
-0.2
-0.5
-0.3
-0.5
+0.1
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
-0.5
+0.0
-0.4
-0.1
-0.0
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
-0.5
-0.0
-0.3
-0.1
-0.0
light
Succinic Acid; Light intensity 9 uM
-0.2
-0.1
-0.0
-0.1
-0.3
anaerboic nitrogen source
Low light with N2
-0.0
-0.1
-0.2
-0.3
-0.0
smn_rich
SMN_rich
-0.1
-0.1
+0.1
-0.1
-0.3
light
Succinic Acid; Light intensity 18 uM
-0.4
+0.0
+0.4
-0.1
-0.4
carbon source
Succinate (C)
-0.1
-0.0
+0.1
-0.2
-0.3
smn_rich
SMN_rich_noKan
+0.1
+0.1
-0.1
+0.0
-0.5
light
Succinic Acid; Light intensity 38 uM
+0.2
-0.2
-0.1
+0.1
-0.4
light
Succinic Acid; Light intensity 75 uM
+0.2
-0.0
+0.0
-0.1
-0.3
smn_rich
SMN_rich
-0.1
+0.1
+0.2
-0.0
-0.4
carbon source
Hexanoic 21 mM; anaerobic
-0.3
+0.1
+0.1
-0.2
+0.1
carbon source
Hexanoic 21 mM; anaerobic
+0.0
-0.1
+0.3
+0.1
-0.3
carbon source
Valeric 25 mM; anaerobic
+0.1
+0.3
+0.1
-0.1
-0.1
carbon source
Valeric 25 mM; anaerobic
-0.1
-0.2
+0.0
+0.1
+0.4
carbon source
Succinic Acid 31.25 mM; anaerobic
+0.1
-0.1
+0.3
+0.1
-0.2
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
-0.1
+0.4
-0.2
+0.1
+0.1
carbon source
Valeric 25 mM; anaerobic
+0.0
+0.4
+0.0
-0.2
+0.1
light
Succinic Acid; Light intensity 150 uM
+0.1
-0.1
+0.1
+0.1
+0.3
carbon source
Hexanoic 21 mM; anaerobic
-0.1
+0.2
+0.0
-0.0
+0.5
light
acetate; Light intensity 18 uM
+0.1
+0.0
-0.2
+0.2
+0.5
light
Succinic Acid; Light intensity 18 uM
+0.5
+0.0
-0.1
+0.1
+0.2
light
acetate; Light intensity 38 uM
+0.2
-0.1
-0.0
+0.3
+0.7
carbon source
carbon source anaerobic Succinic Acid 31.25 mM
+0.1
+0.9
+0.4
+0.1
-0.0
light
Succinic Acid; Light intensity 150 uM
-0.0
-0.1
+0.2
+0.4
+1.6
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