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Fitness for 5 genes in
Rhodospirillum rubrum S1H
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Rru_A0746 and Rru_A0747 are separated by 134 nucleotides
Rru_A0747 and Rru_A0748 are separated by 126 nucleotides
Rru_A0748 and Rru_A0749 are separated by 20 nucleotides
Rru_A0749 and Rru_A0750 overlap by 4 nucleotides
Rru_A0746: Rru_A0746 - hypothetical protein (NCBI), at 873,473 to 875,005
_A0746
Rru_A0747: Rru_A0747 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (NCBI), at 875,140 to 876,294
_A0747
Rru_A0748: Rru_A0748 - Histidyl-tRNA synthetase, class IIa (NCBI), at 876,421 to 877,668
_A0748
Rru_A0749: Rru_A0749 - Glutamyl-tRNA reductase (NCBI), at 877,689 to 879,014
_A0749
Rru_A0750: Rru_A0750 - Peptide chain release factor 1 (NCBI), at 879,011 to 880,075
_A0750
Group
Condition
Rru
_A0746
Rru
_A0747
Rru
_A0748
Rru
_A0749
Rru
_A0750
carbon source
Hexanoic 21 mM; anaerobic
-3.0
N.D.
N.D.
N.D.
N.D.
carbon source
Succinate (C)_noKan
-1.0
N.D.
N.D.
N.D.
N.D.
smn_rich
SMN_rich_noKan
-0.9
N.D.
N.D.
N.D.
N.D.
carbon source
Succinic Acid 31.25 mM; anaerobic
-0.6
N.D.
N.D.
N.D.
N.D.
carbon source
Valeric 25 mM; anaerobic
-0.6
N.D.
N.D.
N.D.
N.D.
smn_rich
SMN_rich
-0.6
N.D.
N.D.
N.D.
N.D.
light
Succinic Acid; Light intensity 18 uM
-0.5
N.D.
N.D.
N.D.
N.D.
smn_rich
SMN_rich_noKan
-0.5
N.D.
N.D.
N.D.
N.D.
carbon source
Succinate (C)
-0.5
N.D.
N.D.
N.D.
N.D.
carbon source
Succinate (C)_noKan
-0.4
N.D.
N.D.
N.D.
N.D.
carbon source
Succinic Acid 31.25 mM; anaerobic
+0.4
N.D.
N.D.
N.D.
N.D.
anaerboic nitrogen source
L-Malic Acid (C) and N2; anaerobic; high light
+0.5
N.D.
N.D.
N.D.
N.D.
carbon source
Succinic Acid 31.25 mM; anaerobic
+0.5
N.D.
N.D.
N.D.
N.D.
anaerboic nitrogen source
Low light with N2
+0.6
N.D.
N.D.
N.D.
N.D.
carbon source
Succinic Acid 31.25 mM; anaerobic
+0.6
N.D.
N.D.
N.D.
N.D.
carbon source
Succinic Acid 31.25 mM; anaerobic
+0.7
N.D.
N.D.
N.D.
N.D.
carbon source
Valeric 25 mM; anaerobic
+0.8
N.D.
N.D.
N.D.
N.D.
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
+0.8
N.D.
N.D.
N.D.
N.D.
light
Succinic Acid; Light intensity 75 uM
+0.8
N.D.
N.D.
N.D.
N.D.
light
Succinic Acid; Light intensity 9 uM
+0.9
N.D.
N.D.
N.D.
N.D.
carbon source
Hexanoic 21 mM; anaerobic
+0.9
N.D.
N.D.
N.D.
N.D.
light
acetate; Light intensity 18 uM
+0.9
N.D.
N.D.
N.D.
N.D.
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
+1.0
N.D.
N.D.
N.D.
N.D.
light
Succinic Acid; Light intensity 18 uM
+1.4
N.D.
N.D.
N.D.
N.D.
light
acetate; Light intensity 18 uM
+1.5
N.D.
N.D.
N.D.
N.D.
light
acetate; Light intensity 75 uM
+1.8
N.D.
N.D.
N.D.
N.D.
carbon source
carbon source anaerobic Succinic Acid 31.25 mM
+2.0
N.D.
N.D.
N.D.
N.D.
light
acetate; Light intensity 38 uM
+2.6
N.D.
N.D.
N.D.
N.D.
light
Succinic Acid; Light intensity 150 uM
+2.9
N.D.
N.D.
N.D.
N.D.
light
Succinic Acid; Light intensity 150 uM
+3.9
N.D.
N.D.
N.D.
N.D.
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