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Fitness for 5 genes in
Rhodospirillum rubrum S1H
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Rru_A0708 and Rru_A0709 overlap by 4 nucleotides
Rru_A0709 and Rru_A0710 are separated by 29 nucleotides
Rru_A0710 and Rru_A0711 are separated by 77 nucleotides
Rru_A0711 and Rru_A0712 are separated by 190 nucleotides
Rru_A0708: Rru_A0708 - Phosphoribosylformylglycinamidine synthase II (NCBI), at 835,476 to 837,698
_A0708
Rru_A0709: Rru_A0709 - Phosphoribosylformylglycinamidine synthase I (NCBI), at 837,695 to 838,387
_A0709
Rru_A0710: Rru_A0710 - Phosphoribosylformylglycinamidine synthetase PurS (NCBI), at 838,417 to 838,677
_A0710
Rru_A0711: Rru_A0711 - phosphoribosylaminoimidazole-succinocarboxamidesynthase (RefSeq), at 838,755 to 839,522
_A0711
Rru_A0712: Rru_A0712 - Transcriptional Regulator, XRE family (NCBI), at 839,713 to 840,306
_A0712
Group
Condition
Rru
_A0708
Rru
_A0709
Rru
_A0710
Rru
_A0711
Rru
_A0712
carbon source
Valeric 25 mM; anaerobic
N.D.
N.D.
N.D.
N.D.
-1.9
carbon source
Succinic Acid 31.25 mM; anaerobic
N.D.
N.D.
N.D.
N.D.
-1.8
carbon source
Hexanoic 21 mM; anaerobic
N.D.
N.D.
N.D.
N.D.
-1.0
anaerboic nitrogen source
L-Malic Acid (C) and N2; anaerobic; high light
N.D.
N.D.
N.D.
N.D.
-1.0
anaerboic nitrogen source
L-Malic Acid (C) and N2; anaerobic; high light
N.D.
N.D.
N.D.
N.D.
-1.0
carbon source
Succinate (C)_noKan
N.D.
N.D.
N.D.
N.D.
-1.0
smn_rich
SMN_rich_noKan
N.D.
N.D.
N.D.
N.D.
-0.8
carbon source
Hexanoic 21 mM; anaerobic
N.D.
N.D.
N.D.
N.D.
-0.8
carbon source
Succinic Acid 31.25 mM; anaerobic
N.D.
N.D.
N.D.
N.D.
-0.7
smn_rich
SMN_rich_noKan
N.D.
N.D.
N.D.
N.D.
-0.5
carbon source
Succinate (C)_noKan
N.D.
N.D.
N.D.
N.D.
-0.5
carbon source
Valeric 25 mM; anaerobic
N.D.
N.D.
N.D.
N.D.
-0.5
anaerboic nitrogen source
Low light with N2
N.D.
N.D.
N.D.
N.D.
-0.5
carbon source
Valeric 25 mM; anaerobic
N.D.
N.D.
N.D.
N.D.
-0.5
light
Succinic Acid; Light intensity 75 uM
N.D.
N.D.
N.D.
N.D.
+0.5
carbon source
carbon source anaerobic Succinic Acid 31.25 mM
N.D.
N.D.
N.D.
N.D.
+0.5
carbon source
Hexanoic 21 mM; anaerobic
N.D.
N.D.
N.D.
N.D.
+0.5
light
Succinic Acid; Light intensity 18 uM
N.D.
N.D.
N.D.
N.D.
+0.5
carbon source
Valeric 25 mM; anaerobic
N.D.
N.D.
N.D.
N.D.
+0.6
carbon source
Succinate (C)
N.D.
N.D.
N.D.
N.D.
+0.6
carbon source
Hexanoic 21 mM; anaerobic
N.D.
N.D.
N.D.
N.D.
+0.6
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
N.D.
N.D.
N.D.
N.D.
+0.8
light
acetate; Light intensity 18 uM
N.D.
N.D.
N.D.
N.D.
+0.9
carbon source
Succinic Acid 31.25 mM; anaerobic
N.D.
N.D.
N.D.
N.D.
+0.9
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
N.D.
N.D.
N.D.
N.D.
+1.0
light
acetate; Light intensity 18 uM
N.D.
N.D.
N.D.
N.D.
+1.5
light
acetate; Light intensity 75 uM
N.D.
N.D.
N.D.
N.D.
+1.6
light
acetate; Light intensity 38 uM
N.D.
N.D.
N.D.
N.D.
+2.2
light
Succinic Acid; Light intensity 150 uM
N.D.
N.D.
N.D.
N.D.
+2.9
light
Succinic Acid; Light intensity 150 uM
N.D.
N.D.
N.D.
N.D.
+4.2
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