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Fitness for 5 genes in
Rhodospirillum rubrum S1H
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Rru_A0371 and Rru_A0372 are separated by 52 nucleotides
Rru_A0372 and Rru_A0373 are separated by 131 nucleotides
Rru_A0373 and Rru_A0374 are separated by 49 nucleotides
Rru_A0374 and Rru_A0375 are separated by 114 nucleotides
Rru_A0371: Rru_A0371 - Double-transmembrane region-like (NCBI), at 445,106 to 447,889
_A0371
Rru_A0372: Rru_A0372 - hypothetical protein (NCBI), at 447,942 to 450,014
_A0372
Rru_A0373: Rru_A0373 - flavodoxin/nitric oxide synthase (NCBI), at 450,146 to 450,754
_A0373
Rru_A0374: Rru_A0374 - hypothetical protein (NCBI), at 450,804 to 451,733
_A0374
Rru_A0375: Rru_A0375 - Pirin-like (NCBI), at 451,848 to 452,543
_A0375
Group
Condition
Rru
_A0371
Rru
_A0372
Rru
_A0373
Rru
_A0374
Rru
_A0375
carbon source
Hexanoic 21 mM; anaerobic
-1.3
-1.5
-0.2
+0.0
+0.4
carbon source
Succinic Acid 31.25 mM; anaerobic
-0.7
-1.6
+0.1
-0.1
+0.1
carbon source
Valeric 25 mM; anaerobic
-1.2
-1.4
-0.1
+0.2
+0.3
carbon source
Hexanoic 21 mM; anaerobic
-0.9
-0.9
-0.0
-0.2
-0.0
carbon source
Succinic Acid 31.25 mM; anaerobic
-1.2
-0.6
-0.4
+0.2
+0.1
carbon source
Succinic Acid 31.25 mM; anaerobic
-0.8
-1.2
-0.4
+0.2
+0.3
anaerboic nitrogen source
L-Malic Acid (C) and N2; anaerobic; high light
-0.7
-1.1
+0.2
-0.0
+0.0
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
-0.7
-0.6
-0.3
-0.1
-0.0
anaerboic nitrogen source
L-Malic Acid (C) and N2; anaerobic; high light
-0.6
-1.0
+0.0
-0.1
-0.0
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
-0.7
-0.9
-0.0
+0.1
-0.1
carbon source
Valeric 25 mM; anaerobic
-0.6
-0.7
+0.1
-0.1
+0.0
carbon source
carbon source anaerobic Succinic Acid 31.25 mM
-0.5
-1.2
+0.4
+0.1
-0.1
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
-0.4
-0.4
-0.1
+0.2
-0.0
carbon source
Hexanoic 21 mM; anaerobic
+0.5
-0.3
-0.2
-0.4
-0.3
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
-0.1
-0.5
-0.5
+0.2
+0.3
light
acetate; Light intensity 38 uM
-0.4
-0.3
+0.2
-0.1
+0.2
anaerboic nitrogen source
L-Malic Acid (C) and N2; high light
-0.4
-0.3
-0.0
+0.4
+0.1
light
Succinic Acid; Light intensity 18 uM
-0.3
-0.4
+0.4
-0.2
+0.2
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
+0.0
-0.3
-0.4
+0.1
+0.4
carbon source
Hexanoic 21 mM; anaerobic
+0.6
+0.4
-0.3
-0.2
-0.3
carbon source
Hexanoic 21 mM; anaerobic
+0.4
+0.4
-0.0
-0.4
-0.0
light
acetate; Light intensity 18 uM
+0.4
-0.3
+0.2
-0.2
+0.2
light
Succinic Acid; Light intensity 75 uM
+0.4
-0.3
+0.1
+0.3
+0.1
carbon source
Valeric 25 mM; anaerobic
+0.5
+0.4
-0.0
-0.2
-0.0
anaerboic nitrogen source
SMN_rich_anaerobic
+0.3
+0.5
+0.0
+0.2
+0.1
light
acetate; Light intensity 75 uM
+0.8
+0.3
+0.1
-0.2
+0.2
light
acetate; Light intensity 18 uM
+0.9
+0.1
+0.3
-0.0
+0.3
light
Succinic Acid; Light intensity 150 uM
+1.8
+1.1
+0.3
-0.3
+0.1
light
acetate; Light intensity 38 uM
+1.8
+1.0
+0.4
+0.7
+0.1
light
Succinic Acid; Light intensity 150 uM
+3.6
+2.0
+1.2
+0.0
+0.3
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