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Fitness for 5 genes in
Rhodospirillum rubrum S1H
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Rru_A0250 and Rru_A0251 are separated by 2 nucleotides
Rru_A0251 and Rru_A0252 are separated by 161 nucleotides
Rru_A0252 and Rru_A0253 are separated by 301 nucleotides
Rru_A0253 and Rru_A0254 overlap by 8 nucleotides
Rru_A0250: Rru_A0250 - Xylulokinase (NCBI), at 310,945 to 312,441
_A0250
Rru_A0251: Rru_A0251 - Transcriptional Regulator, AraC family (NCBI), at 312,444 to 313,373
_A0251
Rru_A0252: Rru_A0252 - Zinc-containing alcohol dehydrogenase superfamily (NCBI), at 313,535 to 314,578
_A0252
Rru_A0253: Rru_A0253 - GDP-mannose 4,6-dehydratase (NCBI), at 314,880 to 315,950
_A0253
Rru_A0254: Rru_A0254 - NAD-dependent epimerase/dehydratase (NCBI), at 315,943 to 316,932
_A0254
Group
Condition
Rru
_A0250
Rru
_A0251
Rru
_A0252
Rru
_A0253
Rru
_A0254
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
-0.2
-0.2
-0.3
-1.5
+0.1
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
-0.2
-0.2
-0.3
-1.4
+0.1
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
-0.2
-0.2
-0.0
-1.0
+0.1
light
Succinic Acid; Light intensity 18 uM
+0.0
-0.2
-0.1
-0.3
-0.6
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
-0.1
-0.4
-0.2
-0.4
-0.0
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; high light
-0.1
-0.4
-0.2
-0.4
+0.0
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
-0.2
-0.0
-0.0
-0.8
+0.1
light
acetate; Light intensity 75 uM
-0.2
+0.1
-0.2
+0.0
-0.5
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
-0.0
-0.1
+0.0
-0.4
-0.2
carbon source
Hexanoic 21 mM; anaerobic
-0.4
-0.3
+0.0
-0.2
+0.2
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
-0.4
+0.1
+0.1
-0.4
-0.0
light
acetate; Light intensity 18 uM
-0.0
-0.0
-0.0
+0.2
-0.6
light
Succinic Acid; Light intensity 9 uM
-0.1
+0.1
+0.1
-0.1
-0.5
carbon source
Valeric 25 mM; anaerobic
-0.1
-0.3
+0.2
-0.2
-0.0
carbon source
Succinic Acid 31.25 mM; anaerobic
+0.2
-0.1
-0.2
-0.1
-0.2
light
Succinic Acid; Light intensity 75 uM
-0.2
+0.2
+0.0
-0.0
-0.5
light
acetate; Light intensity 38 uM
+0.0
+0.0
-0.2
+0.2
-0.4
carbon source
Succinic Acid 31.25 mM; anaerobic
+0.1
-0.5
+0.3
-0.1
-0.1
anaerboic nitrogen source
L-Malic Acid (C) with ammonium chloride; no light
+0.2
-0.2
-0.0
-0.6
+0.4
carbon source
carbon source anaerobic Succinic Acid 31.25 mM
+0.5
-0.4
+0.2
-0.2
-0.2
carbon source
Hexanoic 21 mM; anaerobic
-0.3
-0.3
+0.3
-0.1
+0.2
anaerboic nitrogen source
L-Malic Acid (C) and N2; no light
+0.1
-0.0
+0.3
-0.4
-0.0
carbon source
Valeric 25 mM; anaerobic
+0.4
+0.2
-0.4
+0.1
-0.2
carbon source
Hexanoic 21 mM; anaerobic
+0.4
-0.2
-0.2
+0.3
-0.1
light
acetate; Light intensity 38 uM
-0.1
+0.9
+0.1
-0.1
-0.6
carbon source
Succinic Acid 31.25 mM; anaerobic
-0.3
+0.2
+0.1
-0.0
+0.2
carbon source
Succinic Acid 31.25 mM; anaerobic
+0.3
+0.2
-0.2
+0.1
-0.1
light
acetate; Light intensity 18 uM
+0.3
+0.2
+0.1
-0.2
+0.1
light
Succinic Acid; Light intensity 150 uM
-0.0
+0.6
+0.7
-0.2
-0.5
light
Succinic Acid; Light intensity 18 uM
+0.2
+0.2
+0.0
+0.4
-0.1
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