Gene info for RR42_RS11260 in Cupriavidus basilensis FW507-4G11

Updated annotation (from data): Methylisocitrate lyase (EC 4.1.3.30)
Rationale: Specifically important for utilizing Sodium propionate. Automated validation from mutant phenotype: the predicted function (4.1.3.30) was linked to the condition via a SEED subsystem. This annotation was also checked manually.
Original annotation: 2-methylisocitrate lyase
Type 1: Protein-coding gene
Located on scaffold NZ_CP010536, + strand, nucleotides 2,407,161 to 2,408,069
See nucleotide sequence around RR42_RS11260 or for all of scaffold NZ_CP010536

Other databases: NCBI, uniprot: A0A0C4Y9S6

Nearby Genes

500 ntRR42_RS11235 and RR42_RS11240 are separated by 56 nucleotidesRR42_RS11240 and RR42_RS11245 are separated by 170 nucleotidesRR42_RS11245 and RR42_RS11250 are separated by 170 nucleotidesRR42_RS11250 and RR42_RS11255 are separated by 5 nucleotidesRR42_RS11255 and RR42_RS11260 are separated by 359 nucleotidesRR42_RS11260 and RR42_RS11265 are separated by 73 nucleotidesRR42_RS11265 and RR42_RS11270 are separated by 110 nucleotidesRR42_RS11270 and RR42_RS11275 are separated by 80 nucleotidesRR42_RS11275 and RR42_RS11280 are separated by 382 nucleotidesRR42_RS11280 and RR42_RS11285 are separated by 112 nucleotides RR42_RS11235: RR42_RS11235 - peptide ABC transporter substrate-binding protein, at 2,400,677 to 2,401,669 _RS11235 RR42_RS11240: RR42_RS11240 - D-aminoacylase, at 2,401,726 to 2,403,189 _RS11240 RR42_RS11245: RR42_RS11245 - antibiotic biosynthesis monooxygenase, at 2,403,360 to 2,403,653 _RS11245 RR42_RS11250: RR42_RS11250 - cysteine synthase, at 2,403,824 to 2,404,834 _RS11250 RR42_RS11255: RR42_RS11255 - Fis family transcriptional regulator, at 2,404,840 to 2,406,801 _RS11255 RR42_RS11260: RR42_RS11260 - Methylisocitrate lyase (EC 4.1.3.30) (from data), at 2,407,161 to 2,408,069 _RS11260 RR42_RS11265: RR42_RS11265 - methylcitrate synthase, at 2,408,143 to 2,409,300 _RS11265 RR42_RS11270: RR42_RS11270 - aconitate hydratase, at 2,409,411 to 2,412,008 _RS11270 RR42_RS11275: RR42_RS11275 - 3-methylitaconate isomerase, at 2,412,089 to 2,413,279 _RS11275 RR42_RS11280: RR42_RS11280 - phenylacetic acid degradation protein, at 2,413,662 to 2,414,090 _RS11280 RR42_RS11285: RR42_RS11285 - thioesterase, at 2,414,203 to 2,414,640 _RS11285
Locus Name Description Strand Phenotype
RR42_RS11235 RR42_RS11235 peptide ABC transporter substrate-binding protein + insig.
RR42_RS11240 RR42_RS11240 D-aminoacylase + insig.
RR42_RS11245 RR42_RS11245 antibiotic biosynthesis monooxygenase + insig.
RR42_RS11250 RR42_RS11250 cysteine synthase + insig.
RR42_RS11255 RR42_RS11255 Fis family transcriptional regulator - strong
RR42_RS11260 RR42_RS11260 Methylisocitrate lyase (EC 4.1.3.30) (from data) + strong
RR42_RS11265 RR42_RS11265 methylcitrate synthase + no data
RR42_RS11270 RR42_RS11270 aconitate hydratase + strong
RR42_RS11275 RR42_RS11275 3-methylitaconate isomerase + strong
RR42_RS11280 RR42_RS11280 phenylacetic acid degradation protein - insig.
RR42_RS11285 RR42_RS11285 thioesterase - insig.

Or browse nearby genes

Or see the comparative fitness browser