Gene info for RR42_RS03040 in Cupriavidus basilensis FW507-4G11

Updated annotation (from data): Outer membrane protein (NodT-like) required for 4-hydroxybenzoate transport, together with FUSC, MFP, and DUF1656 proteins (RR42_RS03025, RR42_RS03035, and RR42_RS03030)
Rationale: specific phenotype on 4-hydroxybenzoate and cofit with other nearby components. Not clear if this is primarily an efflux pump (because of the high and potentially toxic concentration of hydroxybenzoate) or for uptake
Original annotation: RND transporter
Type 1: Protein-coding gene
Located on scaffold NZ_CP010536, + strand, nucleotides 672,626 to 674,089
See nucleotide sequence around RR42_RS03040 or for all of scaffold NZ_CP010536

Other databases: NCBI, uniprot: A0A0C4Y7B9

Nearby Genes

500 ntRR42_RS03015 and RR42_RS03020 are separated by 354 nucleotidesRR42_RS03020 and RR42_RS03025 are separated by 4 nucleotidesRR42_RS03025 and RR42_RS03030 are separated by 89 nucleotidesRR42_RS03030 and RR42_RS03035 overlap by 4 nucleotidesRR42_RS03035 and RR42_RS03040 overlap by 4 nucleotidesRR42_RS03040 and RR42_RS03045 are separated by 110 nucleotidesRR42_RS03045 and RR42_RS03050 are separated by 106 nucleotidesRR42_RS03050 and RR42_RS03055 are separated by 300 nucleotidesRR42_RS03055 and RR42_RS03060 are separated by 204 nucleotidesRR42_RS03060 and RR42_RS03065 are separated by 264 nucleotides RR42_RS03015: RR42_RS03015 - enoyl-CoA hydratase, at 667,753 to 668,550 _RS03015 RR42_RS03020: RR42_RS03020 - MarR family transcriptional regulator, at 668,905 to 669,366 _RS03020 RR42_RS03025: RR42_RS03025 - Inner membrane protein (FUSC-like) required for 4-hydroxybenzoate transport, together with NodT, MFP, and DUF1656 proteins (RR42_RS03040, RR42_RS03035, and RR42_RS03030) (from data), at 669,371 to 671,365 _RS03025 RR42_RS03030: RR42_RS03030 - required for 4-hydroxybenzoate transport, together with NodT, MFP, and FUSC proteins (RR42_RS03040, RR42_RS03035, and RR42_RS03025) (from data), at 671,455 to 671,664 _RS03030 RR42_RS03035: RR42_RS03035 - membrane protein, at 671,661 to 672,629 _RS03035 RR42_RS03040: RR42_RS03040 - Outer membrane protein (NodT-like) required for 4-hydroxybenzoate transport, together with FUSC, MFP, and DUF1656 proteins (RR42_RS03025, RR42_RS03035, and RR42_RS03030) (from data), at 672,626 to 674,089 _RS03040 RR42_RS03045: RR42_RS03045 - dioxygenase, at 674,200 to 675,021 _RS03045 RR42_RS03050: RR42_RS03050 - energy transducer TonB, at 675,128 to 675,868 _RS03050 RR42_RS03055: RR42_RS03055 - tRNA-Met, at 676,169 to 676,245 _RS03055 RR42_RS03060: RR42_RS03060 - MFS transporter, at 676,450 to 678,150 _RS03060 RR42_RS03065: RR42_RS03065 - membrane protein, at 678,415 to 678,732 _RS03065
Locus Name Description Strand Phenotype
RR42_RS03015 RR42_RS03015 enoyl-CoA hydratase - insig.
RR42_RS03020 RR42_RS03020 MarR family transcriptional regulator + insig.
RR42_RS03025 RR42_RS03025 Inner membrane protein (FUSC-like) required for 4-hydroxybenzoate transport, together with NodT, MFP, and DUF1656 proteins (RR42_RS03040, RR42_RS03035, and RR42_RS03030) (from data) + strong
RR42_RS03030 RR42_RS03030 required for 4-hydroxybenzoate transport, together with NodT, MFP, and FUSC proteins (RR42_RS03040, RR42_RS03035, and RR42_RS03025) (from data) + strong
RR42_RS03035 RR42_RS03035 membrane protein + insig.
RR42_RS03040 RR42_RS03040 Outer membrane protein (NodT-like) required for 4-hydroxybenzoate transport, together with FUSC, MFP, and DUF1656 proteins (RR42_RS03025, RR42_RS03035, and RR42_RS03030) (from data) + strong
RR42_RS03045 RR42_RS03045 dioxygenase + insig.
RR42_RS03050 RR42_RS03050 energy transducer TonB - insig.
RR42_RS03055 RR42_RS03055 tRNA-Met - no data
RR42_RS03060 RR42_RS03060 MFS transporter - sig.
RR42_RS03065 RR42_RS03065 membrane protein - sig.

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