Gene info for Pf6N2E2_5556 in Pseudomonas fluorescens FW300-N2E2

Updated annotation (from data): Aminomethyltransferase (EC 2.1.2.10)
Rationale: Specifically important for utilizing Glycine. Automated validation from mutant phenotype: the predicted function (2.1.2.10) was linked to the condition via a SEED subsystem. This annotation was also checked manually.
Original annotation: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Type 1: Protein-coding gene
Located on scaffold unitig_0|quiver.unitig_1|quiver|pilon, - strand, nucleotides 6,371,537 to 6,372,661
See nucleotide sequence around Pf6N2E2_5556 or for all of scaffold unitig_0|quiver.unitig_1|quiver|pilon

Other databases: refseq: TK06_RS27690, uniprot: A0A161H3Z9

Nearby Genes

500 ntPf6N2E2_5551 and Pf6N2E2_5552 are separated by 10 nucleotidesPf6N2E2_5552 and Pf6N2E2_5553 are separated by 476 nucleotidesPf6N2E2_5553 and Pf6N2E2_5554 are separated by 234 nucleotidesPf6N2E2_5554 and Pf6N2E2_5555 are separated by 93 nucleotidesPf6N2E2_5555 and Pf6N2E2_5556 are separated by 394 nucleotidesPf6N2E2_5556 and Pf6N2E2_5557 are separated by 39 nucleotidesPf6N2E2_5557 and Pf6N2E2_5558 are separated by 176 nucleotidesPf6N2E2_5558 and Pf6N2E2_5559 are separated by 10 nucleotidesPf6N2E2_5559 and Pf6N2E2_5560 are separated by 424 nucleotidesPf6N2E2_5560 and Pf6N2E2_5561 are separated by 129 nucleotides Pf6N2E2_5551 - Copper resistance protein B, at 6,365,830 to 6,366,750 _5551 Pf6N2E2_5552 - Multicopper oxidase, at 6,366,761 to 6,368,578 _5552 Pf6N2E2_5553 - Quinolinate synthetase (EC 2.5.1.72), at 6,369,055 to 6,370,113 _5553 Pf6N2E2_5554 - FIG023103: Predicted transmembrane protein, at 6,370,348 to 6,370,836 _5554 Pf6N2E2_5555 - Cold shock protein CspA, at 6,370,930 to 6,371,142 _5555 Pf6N2E2_5556 - Aminomethyltransferase (EC 2.1.2.10) (from data), at 6,371,537 to 6,372,661 _5556 Pf6N2E2_5557 - L-serine ammonia-lyase (EC 4.3.1.17) (from data), at 6,372,701 to 6,374,077 _5557 Pf6N2E2_5558 - Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data), at 6,374,254 to 6,377,115 _5558 Pf6N2E2_5559 - Glycine cleavage system H protein, at 6,377,126 to 6,377,509 _5559 Pf6N2E2_5560 - Sigma-54 dependent transcriptional regulator/sensory box protein, at 6,377,934 to 6,379,442 _5560 Pf6N2E2_5561 - LysR-family transcriptional regulator clustered with PA0057, at 6,379,572 to 6,380,459 _5561
Locus Name Description Strand Phenotype
Pf6N2E2_5551 Copper resistance protein B - strong
Pf6N2E2_5552 Multicopper oxidase - strong
Pf6N2E2_5553 Quinolinate synthetase (EC 2.5.1.72) + strong
Pf6N2E2_5554 FIG023103: Predicted transmembrane protein - strong
Pf6N2E2_5555 Cold shock protein CspA - sig.
Pf6N2E2_5556 Aminomethyltransferase (EC 2.1.2.10) (from data) - strong
Pf6N2E2_5557 L-serine ammonia-lyase (EC 4.3.1.17) (from data) - strong
Pf6N2E2_5558 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) - strong
Pf6N2E2_5559 Glycine cleavage system H protein - strong
Pf6N2E2_5560 Sigma-54 dependent transcriptional regulator/sensory box protein - insig.
Pf6N2E2_5561 LysR-family transcriptional regulator clustered with PA0057 - insig.

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