Gene info for Pf6N2E2_4693 in Pseudomonas fluorescens FW300-N2E2

Updated annotation (from data): ABC transporter for Carnitine Hydrochloride, periplasmic substrate-binding component
Rationale: Specific phenotype on Carnitine Hydrochloride. Similar to CaiX. There might also be another SBP, Pf6N2E2_4683 (similar to CbcX) that is expected to be specific for choline and glycine-betaine. However _4683 is important for carnitine utilization as well and it does not appear to be a polar effect, so it could be another subunit.
Original annotation: L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1)
Type 1: Protein-coding gene
Located on scaffold unitig_0|quiver.unitig_1|quiver|pilon, - strand, nucleotides 5,426,068 to 5,427,012
See nucleotide sequence around Pf6N2E2_4693 or for all of scaffold unitig_0|quiver.unitig_1|quiver|pilon

Other databases: refseq: TK06_RS23460, uniprot: A0A160A3D7

Nearby Genes

500 ntPf6N2E2_4688 and Pf6N2E2_4689 are separated by 20 nucleotidesPf6N2E2_4689 and Pf6N2E2_4690 are separated by 177 nucleotidesPf6N2E2_4690 and Pf6N2E2_4691 are separated by 12 nucleotidesPf6N2E2_4691 and Pf6N2E2_4692 are separated by 38 nucleotidesPf6N2E2_4692 and Pf6N2E2_4693 are separated by 71 nucleotidesPf6N2E2_4693 and Pf6N2E2_4694 are separated by 186 nucleotidesPf6N2E2_4694 and Pf6N2E2_4695 are separated by 189 nucleotidesPf6N2E2_4695 and Pf6N2E2_4696 are separated by 279 nucleotidesPf6N2E2_4696 and Pf6N2E2_4697 are separated by 87 nucleotidesPf6N2E2_4697 and Pf6N2E2_4698 are separated by 142 nucleotides Pf6N2E2_4688 - Gamma-butyrobetaine,2-oxoglutarate dioxygenase (EC 1.14.11.1), at 5,422,126 to 5,423,289 _4688 Pf6N2E2_4689 - L-carnitine 3-dehydrogenase, B subunit (EC 1.1.1.108) (from data), at 5,423,310 to 5,423,786 _4689 Pf6N2E2_4690 - L-carnitine 3-dehydrogenase, A subunit (EC 1.1.1.108) (from data), at 5,423,964 to 5,424,929 _4690 Pf6N2E2_4691 - hypothetical protein, at 5,424,942 to 5,425,070 _4691 Pf6N2E2_4692 - dehydrocarnitine cleavage enzyme (EC 2.3.1.-) (from data), at 5,425,109 to 5,425,996 _4692 Pf6N2E2_4693 - ABC transporter for Carnitine Hydrochloride, periplasmic substrate-binding component (from data), at 5,426,068 to 5,427,012 _4693 Pf6N2E2_4694 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 5,427,199 to 5,428,143 _4694 Pf6N2E2_4695 - putative secreted protein, at 5,428,333 to 5,429,502 _4695 Pf6N2E2_4696 - FIG00953108: hypothetical protein, at 5,429,782 to 5,430,198 _4696 Pf6N2E2_4697 - hypothetical protein, at 5,430,286 to 5,431,062 _4697 Pf6N2E2_4698 - putative DNA binding protein, at 5,431,205 to 5,431,531 _4698
Locus Name Description Strand Phenotype
Pf6N2E2_4688 Gamma-butyrobetaine,2-oxoglutarate dioxygenase (EC 1.14.11.1) - sig.
Pf6N2E2_4689 L-carnitine 3-dehydrogenase, B subunit (EC 1.1.1.108) (from data) - strong
Pf6N2E2_4690 L-carnitine 3-dehydrogenase, A subunit (EC 1.1.1.108) (from data) - strong
Pf6N2E2_4691 hypothetical protein + insig.
Pf6N2E2_4692 dehydrocarnitine cleavage enzyme (EC 2.3.1.-) (from data) - strong
Pf6N2E2_4693 ABC transporter for Carnitine Hydrochloride, periplasmic substrate-binding component (from data) - strong
Pf6N2E2_4694 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain + strong
Pf6N2E2_4695 putative secreted protein + insig.
Pf6N2E2_4696 FIG00953108: hypothetical protein - insig.
Pf6N2E2_4697 hypothetical protein - insig.
Pf6N2E2_4698 putative DNA binding protein - insig.

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