Gene info for Pf6N2E2_4013 in Pseudomonas fluorescens FW300-N2E2

Updated annotation (from data): 5-aminovalerate transaminase (EC 2.6.1.48)
Rationale: Specifically important for utilizing L-Lysine. Automated validation from mutant phenotype: the predicted function (2.6.1.48) was linked to the condition via a SEED subsystem. This annotation was also checked manually.
Original annotation: 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
Type 1: Protein-coding gene
Located on scaffold unitig_0|quiver.unitig_1|quiver|pilon, - strand, nucleotides 4,684,688 to 4,685,965
See nucleotide sequence around Pf6N2E2_4013 or for all of scaffold unitig_0|quiver.unitig_1|quiver|pilon

Other databases: refseq: TK06_RS20070, uniprot: A0A160A2Z7

Nearby Genes

500 ntPf6N2E2_4008 and Pf6N2E2_4009 are separated by 235 nucleotidesPf6N2E2_4009 and Pf6N2E2_4010 are separated by 146 nucleotidesPf6N2E2_4010 and Pf6N2E2_4011 are separated by 296 nucleotidesPf6N2E2_4011 and Pf6N2E2_4012 are separated by 267 nucleotidesPf6N2E2_4012 and Pf6N2E2_4013 are separated by 138 nucleotidesPf6N2E2_4013 and Pf6N2E2_4014 are separated by 173 nucleotidesPf6N2E2_4014 and Pf6N2E2_6129 are separated by 350 nucleotidesPf6N2E2_6129 and Pf6N2E2_4015 are separated by 289 nucleotidesPf6N2E2_4015 and Pf6N2E2_4016 are separated by 812 nucleotidesPf6N2E2_4016 and Pf6N2E2_4017 are separated by 376 nucleotides Pf6N2E2_4008 - hypothetical protein, at 4,677,921 to 4,678,304 _4008 Pf6N2E2_4009 - GGDEF domain protein, at 4,678,540 to 4,680,447 _4009 Pf6N2E2_4010 - Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1), at 4,680,594 to 4,681,778 _4010 Pf6N2E2_4011 - Sensory box/GGDEF family protein, at 4,682,075 to 4,683,064 _4011 Pf6N2E2_4012 - response regulator, at 4,683,332 to 4,684,549 _4012 Pf6N2E2_4013 - 5-aminovalerate transaminase (EC 2.6.1.48) (from data), at 4,684,688 to 4,685,965 _4013 Pf6N2E2_4014 - Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16), at 4,686,139 to 4,687,581 _4014 Pf6N2E2_6129 - tRNA-Arg-CCG, at 4,687,932 to 4,688,005 _6129 Pf6N2E2_4015 - UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase (EC 6.3.2.13), at 4,688,295 to 4,689,302 _4015 Pf6N2E2_4016 - hypothetical protein, at 4,690,115 to 4,690,387 _4016 Pf6N2E2_4017 - hypothetical protein, at 4,690,764 to 4,691,381 _4017
Locus Name Description Strand Phenotype
Pf6N2E2_4008 hypothetical protein + sig.
Pf6N2E2_4009 GGDEF domain protein - strong
Pf6N2E2_4010 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) + insig.
Pf6N2E2_4011 Sensory box/GGDEF family protein + insig.
Pf6N2E2_4012 response regulator - insig.
Pf6N2E2_4013 5-aminovalerate transaminase (EC 2.6.1.48) (from data) - strong
Pf6N2E2_4014 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) - strong
Pf6N2E2_6129 tRNA-Arg-CCG + no data
Pf6N2E2_4015 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase (EC 6.3.2.13) + insig.
Pf6N2E2_4016 hypothetical protein - insig.
Pf6N2E2_4017 hypothetical protein - no data

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