Gene info for Pf6N2E2_3839 in Pseudomonas fluorescens FW300-N2E2

Updated annotation (from data): 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16)
Rationale: Important for fitness in most defined media. Semi-automated annotation based on the auxotrophic phenotype and a hit to HMM TIGR00007.
Original annotation: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)
Type 1: Protein-coding gene
Located on scaffold unitig_0|quiver.unitig_1|quiver|pilon, - strand, nucleotides 4,472,170 to 4,472,907
See nucleotide sequence around Pf6N2E2_3839 or for all of scaffold unitig_0|quiver.unitig_1|quiver|pilon

Other databases: refseq: TK06_RS19185, uniprot: A0A160A049

Nearby Genes

500 ntPf6N2E2_3834 and Pf6N2E2_3835 are separated by 32 nucleotidesPf6N2E2_3835 and Pf6N2E2_3836 are separated by 1 nucleotidesPf6N2E2_3836 and Pf6N2E2_3837 are separated by 78 nucleotidesPf6N2E2_3837 and Pf6N2E2_3838 are separated by 63 nucleotidesPf6N2E2_3838 and Pf6N2E2_3839 are separated by 9 nucleotidesPf6N2E2_3839 and Pf6N2E2_3840 are separated by 42 nucleotidesPf6N2E2_3840 and Pf6N2E2_3841 overlap by 1 nucleotidesPf6N2E2_3841 and Pf6N2E2_3842 overlap by 1 nucleotidesPf6N2E2_3842 and Pf6N2E2_3843 are separated by 281 nucleotidesPf6N2E2_3843 and Pf6N2E2_3844 are separated by 261 nucleotides Pf6N2E2_3834 - Lipoprotein NlpD, at 4,467,079 to 4,468,371 _3834 Pf6N2E2_3835 - Carboxyl-terminal protease (EC 3.4.21.102), at 4,468,404 to 4,469,720 _3835 Pf6N2E2_3836 - Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase, at 4,469,722 to 4,470,501 _3836 Pf6N2E2_3837 - ABC-type amino acid transport, signal transduction systems, periplasmic component/domain, at 4,470,580 to 4,471,326 _3837 Pf6N2E2_3838 - Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-), at 4,471,390 to 4,472,160 _3838 Pf6N2E2_3839 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data), at 4,472,170 to 4,472,907 _3839 Pf6N2E2_3840 - FIG00956267: hypothetical protein, at 4,472,950 to 4,473,204 _3840 Pf6N2E2_3841 - Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-), at 4,473,204 to 4,473,842 _3841 Pf6N2E2_3842 - Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19), at 4,473,842 to 4,474,435 _3842 Pf6N2E2_3843 - MFS permease, at 4,474,717 to 4,476,378 _3843 Pf6N2E2_3844 - hypothetical protein, at 4,476,640 to 4,477,038 _3844
Locus Name Description Strand Phenotype
Pf6N2E2_3834 Lipoprotein NlpD + strong
Pf6N2E2_3835 Carboxyl-terminal protease (EC 3.4.21.102) + strong
Pf6N2E2_3836 Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase + sig.
Pf6N2E2_3837 ABC-type amino acid transport, signal transduction systems, periplasmic component/domain - insig.
Pf6N2E2_3838 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) - no data
Pf6N2E2_3839 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) - strong
Pf6N2E2_3840 FIG00956267: hypothetical protein - strong
Pf6N2E2_3841 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) - strong
Pf6N2E2_3842 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) - strong
Pf6N2E2_3843 MFS permease - strong
Pf6N2E2_3844 hypothetical protein + insig.

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