Gene info for Pf1N1B4_4623 in Pseudomonas fluorescens FW300-N1B4

Updated annotation (from data): 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43)
Rationale: Specifically important in carbon source L-Arabinose. Similar to PA2216 from Pseudomonas aeruginosa (see PMC:PMC4038344) and to gguC or araD1 (Atu2345) from Agrobacterium tumefaciens (see PMC: PMC3232879), which also have this activity. In Agrobacterium, this reaction is proposed to be a step in L-arabinose oxidation. (Note that 2-keto-3-deoxy-L-lyxonate and 2-keto-3-deoxy-L-arabinonate are the same compound.)
Original annotation: SUGAR TRANSPORTER
Type 1: Protein-coding gene
Located on scaffold unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon, + strand, nucleotides 5,099,613 to 5,100,605
See nucleotide sequence around Pf1N1B4_4623 or for all of scaffold unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon

Other databases: uniprot: A0A161Z7Y9

Nearby Genes

500 ntPf1N1B4_4618 and Pf1N1B4_4619 are separated by 13 nucleotidesPf1N1B4_4619 and Pf1N1B4_4620 are separated by 126 nucleotidesPf1N1B4_4620 and Pf1N1B4_4621 are separated by 186 nucleotidesPf1N1B4_4621 and Pf1N1B4_4622 are separated by 194 nucleotidesPf1N1B4_4622 and Pf1N1B4_4623 are separated by 157 nucleotidesPf1N1B4_4623 and Pf1N1B4_4624 are separated by 10 nucleotidesPf1N1B4_4624 and Pf1N1B4_4625 are separated by 199 nucleotidesPf1N1B4_4625 and Pf1N1B4_4626 overlap by 14 nucleotidesPf1N1B4_4626 and Pf1N1B4_4627 are separated by 115 nucleotidesPf1N1B4_4627 and Pf1N1B4_4628 are separated by 209 nucleotides Pf1N1B4_4618 - hypothetical protein, at 5,092,790 to 5,093,161 _4618 Pf1N1B4_4619 - hypothetical protein, at 5,093,175 to 5,095,172 _4619 Pf1N1B4_4620 - Transcriptional regulator of the arabinose operon in Shewanella, GntR family, at 5,095,299 to 5,096,015 _4620 Pf1N1B4_4621 - L-arabonate dehydratase (EC 4.2.1.25), at 5,096,202 to 5,097,938 _4621 Pf1N1B4_4622 - Nitrate/nitrite transporter, at 5,098,133 to 5,099,455 _4622 Pf1N1B4_4623 - 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) (from data), at 5,099,613 to 5,100,605 _4623 Pf1N1B4_4624 - Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26), at 5,100,616 to 5,102,196 _4624 Pf1N1B4_4625 - FIG00955242: hypothetical protein, at 5,102,396 to 5,102,692 _4625 Pf1N1B4_4626 - 3-carboxymuconate cyclase, at 5,102,679 to 5,103,896 _4626 Pf1N1B4_4627 - FIG00957600: hypothetical protein, at 5,104,012 to 5,104,191 _4627 Pf1N1B4_4628 - hypothetical protein, at 5,104,401 to 5,104,526 _4628
Locus Name Description Strand Phenotype
Pf1N1B4_4618 hypothetical protein - no data
Pf1N1B4_4619 hypothetical protein - insig.
Pf1N1B4_4620 Transcriptional regulator of the arabinose operon in Shewanella, GntR family - no data
Pf1N1B4_4621 L-arabonate dehydratase (EC 4.2.1.25) - sig.
Pf1N1B4_4622 Nitrate/nitrite transporter + strong
Pf1N1B4_4623 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) (from data) + strong
Pf1N1B4_4624 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) + sig.
Pf1N1B4_4625 FIG00955242: hypothetical protein + no data
Pf1N1B4_4626 3-carboxymuconate cyclase + no data
Pf1N1B4_4627 FIG00957600: hypothetical protein + insig.
Pf1N1B4_4628 hypothetical protein + no data

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