Gene info for Pf1N1B4_412 in Pseudomonas fluorescens FW300-N1B4

Updated annotation (from data): L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48)
Rationale: Both of these sugars are catabolized via a 1-dehydrogenase followed by lactonase and dehydratase reactions. This is the only dehydrogenase is specifically important for either of these carbon sources in several Pseudomonas, apart from a alpha-ketoglutarate semialdehyde dehydrogenase that is expected to be the last dedicated step in L-arabinose catabolism (i.e., Pf6N2E2_612). L-arabinose and D-galactose are chemically similar and some dehydrogenases are already known to act on both substrates.
Original annotation: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
Type 1: Protein-coding gene
Located on scaffold unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon, - strand, nucleotides 481,540 to 482,358
See nucleotide sequence around Pf1N1B4_412 or for all of scaffold unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon

Other databases: uniprot: A0A166MLN9

Nearby Genes

500 ntPf1N1B4_407 and Pf1N1B4_408 overlap by 4 nucleotidesPf1N1B4_408 and Pf1N1B4_409 are separated by 245 nucleotidesPf1N1B4_409 and Pf1N1B4_410 are separated by 9 nucleotidesPf1N1B4_410 and Pf1N1B4_411 are separated by 66 nucleotidesPf1N1B4_411 and Pf1N1B4_412 are separated by 122 nucleotidesPf1N1B4_412 and Pf1N1B4_413 are separated by 270 nucleotidesPf1N1B4_413 and Pf1N1B4_414 are separated by 60 nucleotidesPf1N1B4_414 and Pf1N1B4_415 are separated by 242 nucleotidesPf1N1B4_415 and Pf1N1B4_416 are separated by 57 nucleotidesPf1N1B4_416 and Pf1N1B4_417 are separated by 16 nucleotides Pf1N1B4_407 - ADP-ribosylglycohydrolase YegU (EC 3.2.-.-), at 475,906 to 476,904 _407 Pf1N1B4_408 - Transcriptional regulator, GntR family, at 476,901 to 477,578 _408 Pf1N1B4_409 - ABC transporter for D-galactose/L-arabinose, permease component (from data), at 477,824 to 478,792 _409 Pf1N1B4_410 - ABC transporter for D-galactose/L-arabinose, ATPase component (from data), at 478,802 to 480,346 _410 Pf1N1B4_411 - ABC transporter for D-galactose/L-arabinose, substrate-binding component (from data), at 480,413 to 481,417 _411 Pf1N1B4_412 - L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data), at 481,540 to 482,358 _412 Pf1N1B4_413 - L-arabinolactonase (EC 3.1.1.15) (from data), at 482,629 to 483,573 _413 Pf1N1B4_414 - transcriptional regulator, at 483,634 to 484,350 _414 Pf1N1B4_415 - Lipase precursor (EC 3.1.1.3), at 484,593 to 485,471 _415 Pf1N1B4_416 - FIG003620: Proteophosphoglycan precursor (Fragment), at 485,529 to 486,089 _416 Pf1N1B4_417 - lipoprotein, putative, at 486,106 to 486,711 _417
Locus Name Description Strand Phenotype
Pf1N1B4_407 ADP-ribosylglycohydrolase YegU (EC 3.2.-.-) - strong
Pf1N1B4_408 Transcriptional regulator, GntR family - insig.
Pf1N1B4_409 ABC transporter for D-galactose/L-arabinose, permease component (from data) - cofit
Pf1N1B4_410 ABC transporter for D-galactose/L-arabinose, ATPase component (from data) - strong
Pf1N1B4_411 ABC transporter for D-galactose/L-arabinose, substrate-binding component (from data) - strong
Pf1N1B4_412 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) - insig.
Pf1N1B4_413 L-arabinolactonase (EC 3.1.1.15) (from data) - strong
Pf1N1B4_414 transcriptional regulator - sig.
Pf1N1B4_415 Lipase precursor (EC 3.1.1.3) + insig.
Pf1N1B4_416 FIG003620: Proteophosphoglycan precursor (Fragment) - insig.
Pf1N1B4_417 lipoprotein, putative - insig.

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