Gene info for Pf1N1B4_4042 in Pseudomonas fluorescens FW300-N1B4

Updated annotation (from data): Isocitrate lyase (EC 4.1.3.1)
Rationale: Specifically important for utilizing Tween 20. Automated validation from mutant phenotype: the predicted function (ISOCIT-CLEAV-RXN) was linked to the condition via a MetaCyc pathway. This annotation was also checked manually.
Original annotation: Isocitrate lyase (EC 4.1.3.1)
Type 1: Protein-coding gene
Located on scaffold unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon, - strand, nucleotides 4,493,842 to 4,495,167
See nucleotide sequence around Pf1N1B4_4042 or for all of scaffold unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon

Other databases: uniprot: A0A166PRI5

Nearby Genes

500 ntPf1N1B4_4037 and Pf1N1B4_4038 overlap by 4 nucleotidesPf1N1B4_4038 and Pf1N1B4_4039 are separated by 2 nucleotidesPf1N1B4_4039 and Pf1N1B4_4040 are separated by 72 nucleotidesPf1N1B4_4040 and Pf1N1B4_4041 are separated by 10 nucleotidesPf1N1B4_4041 and Pf1N1B4_4042 are separated by 649 nucleotidesPf1N1B4_4042 and Pf1N1B4_4043 are separated by 498 nucleotidesPf1N1B4_4043 and Pf1N1B4_4044 are separated by 236 nucleotidesPf1N1B4_4044 and Pf1N1B4_4045 overlap by 8 nucleotidesPf1N1B4_4045 and Pf1N1B4_4046 are separated by 86 nucleotidesPf1N1B4_4046 and Pf1N1B4_4047 are separated by 127 nucleotides Pf1N1B4_4037 - NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3), at 4,488,385 to 4,489,740 _4037 Pf1N1B4_4038 - NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3), at 4,489,737 to 4,490,234 _4038 Pf1N1B4_4039 - NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3), at 4,490,237 to 4,492,021 _4039 Pf1N1B4_4040 - NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3), at 4,492,094 to 4,492,768 _4040 Pf1N1B4_4041 - NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3), at 4,492,779 to 4,493,192 _4041 Pf1N1B4_4042 - Isocitrate lyase (EC 4.1.3.1) (from data), at 4,493,842 to 4,495,167 _4042 Pf1N1B4_4043 - Type II and III secretion system family protein, at 4,495,666 to 4,496,427 _4043 Pf1N1B4_4044 - GNAT family acetyltransferase YjcF, at 4,496,664 to 4,497,089 _4044 Pf1N1B4_4045 - FIG002776: hypothetical protein, at 4,497,082 to 4,498,251 _4045 Pf1N1B4_4046 - Adenylosuccinate lyase (EC 4.3.2.2), at 4,498,338 to 4,499,708 _4046 Pf1N1B4_4047 - FIG002903: a protein of unknown function perhaps involved in purine metabolism, at 4,499,836 to 4,500,459 _4047
Locus Name Description Strand Phenotype
Pf1N1B4_4037 NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) - no data
Pf1N1B4_4038 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) - strong
Pf1N1B4_4039 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) - strong
Pf1N1B4_4040 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) - strong
Pf1N1B4_4041 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) - strong
Pf1N1B4_4042 Isocitrate lyase (EC 4.1.3.1) (from data) - strong
Pf1N1B4_4043 Type II and III secretion system family protein - insig.
Pf1N1B4_4044 GNAT family acetyltransferase YjcF - no data
Pf1N1B4_4045 FIG002776: hypothetical protein - no data
Pf1N1B4_4046 Adenylosuccinate lyase (EC 4.3.2.2) - no data
Pf1N1B4_4047 FIG002903: a protein of unknown function perhaps involved in purine metabolism - insig.

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