Gene info for Pf1N1B4_2504 in Pseudomonas fluorescens FW300-N1B4

Updated annotation (from data): 5-aminopentanamidase (EC 3.5.1.30)
Rationale: Specifically important for utilizing L-Lysine. Automated validation from mutant phenotype: the predicted function (5-AMINOPENTANAMIDASE-RXN) was linked to the condition via a MetaCyc pathway. This annotation was also checked manually.
Original annotation: 5-aminopentanamidase (EC 3.5.1.30)
Type 1: Protein-coding gene
Located on scaffold unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon, - strand, nucleotides 2,841,037 to 2,841,831
See nucleotide sequence around Pf1N1B4_2504 or for all of scaffold unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon

Other databases: uniprot: A0A166NS80

Nearby Genes

500 ntPf1N1B4_2499 and Pf1N1B4_2500 are separated by 4 nucleotidesPf1N1B4_2500 and Pf1N1B4_2501 overlap by 4 nucleotidesPf1N1B4_2501 and Pf1N1B4_2502 are separated by 127 nucleotidesPf1N1B4_2502 and Pf1N1B4_2503 are separated by 315 nucleotidesPf1N1B4_2503 and Pf1N1B4_2504 are separated by 38 nucleotidesPf1N1B4_2504 and Pf1N1B4_2505 are separated by 12 nucleotidesPf1N1B4_2505 and Pf1N1B4_2506 are separated by 215 nucleotidesPf1N1B4_2506 and Pf1N1B4_2507 are separated by 117 nucleotidesPf1N1B4_2507 and Pf1N1B4_2508 are separated by 574 nucleotidesPf1N1B4_2508 and Pf1N1B4_2509 are separated by 453 nucleotides Pf1N1B4_2499 - Coenzyme PQQ synthesis protein E, at 2,835,034 to 2,836,176 _2499 Pf1N1B4_2500 - Coenzyme PQQ synthesis protein D, at 2,836,181 to 2,836,456 _2500 Pf1N1B4_2501 - Pyrroloquinoline-quinone synthase (EC 1.3.3.11), at 2,836,453 to 2,837,205 _2501 Pf1N1B4_2502 - Coenzyme PQQ synthesis protein B, at 2,837,333 to 2,838,244 _2502 Pf1N1B4_2503 - Coenzyme PQQ synthesis protein F, at 2,838,560 to 2,840,998 _2503 Pf1N1B4_2504 - 5-aminopentanamidase (EC 3.5.1.30) (from data), at 2,841,037 to 2,841,831 _2504 Pf1N1B4_2505 - Lysine 2-monooxygenase (EC 1.13.12.2) (from data), at 2,841,844 to 2,843,526 _2505 Pf1N1B4_2506 - Transcriptional regulator, AsnC family, at 2,843,742 to 2,844,203 _2506 Pf1N1B4_2507 - hypothetical protein, at 2,844,321 to 2,844,482 _2507 Pf1N1B4_2508 - hypothetical protein, at 2,845,057 to 2,845,365 _2508 Pf1N1B4_2509 - hypothetical protein, at 2,845,819 to 2,845,962 _2509
Locus Name Description Strand Phenotype
Pf1N1B4_2499 Coenzyme PQQ synthesis protein E - cofit
Pf1N1B4_2500 Coenzyme PQQ synthesis protein D - no data
Pf1N1B4_2501 Pyrroloquinoline-quinone synthase (EC 1.3.3.11) - cofit
Pf1N1B4_2502 Coenzyme PQQ synthesis protein B - strong
Pf1N1B4_2503 Coenzyme PQQ synthesis protein F - sig.
Pf1N1B4_2504 5-aminopentanamidase (EC 3.5.1.30) (from data) - strong
Pf1N1B4_2505 Lysine 2-monooxygenase (EC 1.13.12.2) (from data) - strong
Pf1N1B4_2506 Transcriptional regulator, AsnC family - strong
Pf1N1B4_2507 hypothetical protein - insig.
Pf1N1B4_2508 hypothetical protein - insig.
Pf1N1B4_2509 hypothetical protein + no data

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