Gene info for Pf1N1B4_2454 in Pseudomonas fluorescens FW300-N1B4

Updated annotation (from data): Serine hydroxymethyltransferase (EC 2.1.2.1)
Rationale: Specific phenotype: utilization of Carnitine (carnitine is broken down via glycine betaine and glycine)
Original annotation: Serine hydroxymethyltransferase (EC 2.1.2.1)
Type 1: Protein-coding gene
Located on scaffold unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon, + strand, nucleotides 2,783,666 to 2,784,919
See nucleotide sequence around Pf1N1B4_2454 or for all of scaffold unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon

Other databases: uniprot: A0A166NR87

Nearby Genes

500 ntPf1N1B4_2449 and Pf1N1B4_2450 are separated by 228 nucleotidesPf1N1B4_2450 and Pf1N1B4_2451 are separated by 245 nucleotidesPf1N1B4_2451 and Pf1N1B4_2452 are separated by 131 nucleotidesPf1N1B4_2452 and Pf1N1B4_2453 overlap by 11 nucleotidesPf1N1B4_2453 and Pf1N1B4_2454 are separated by 192 nucleotidesPf1N1B4_2454 and Pf1N1B4_2455 are separated by 23 nucleotidesPf1N1B4_2455 and Pf1N1B4_2456 are separated by 14 nucleotidesPf1N1B4_2456 and Pf1N1B4_2457 overlap by 4 nucleotidesPf1N1B4_2457 and Pf1N1B4_2458 are separated by 129 nucleotidesPf1N1B4_2458 and Pf1N1B4_2459 overlap by 17 nucleotides Pf1N1B4_2449 - Probable short-chain dehydrogenase, at 2,779,632 to 2,780,456 _2449 Pf1N1B4_2450 - Transposase and inactivated derivatives, at 2,780,685 to 2,781,218 _2450 Pf1N1B4_2451 - Low-specificity L-threonine aldolase (EC 4.1.2.48), at 2,781,464 to 2,782,504 _2451 Pf1N1B4_2452 - Membrane protein, putative, at 2,782,636 to 2,783,352 _2452 Pf1N1B4_2453 - hypothetical protein, at 2,783,342 to 2,783,473 _2453 Pf1N1B4_2454 - Serine hydroxymethyltransferase (EC 2.1.2.1) (from data), at 2,783,666 to 2,784,919 _2454 Pf1N1B4_2455 - Sarcosine oxidase beta subunit (EC 1.5.3.1), at 2,784,943 to 2,786,193 _2455 Pf1N1B4_2456 - Sarcosine oxidase delta subunit (EC 1.5.3.1), at 2,786,208 to 2,786,537 _2456 Pf1N1B4_2457 - Sarcosine oxidase alpha subunit (EC 1.5.3.1), at 2,786,534 to 2,789,551 _2457 Pf1N1B4_2458 - Sarcosine oxidase gamma subunit (EC 1.5.3.1), at 2,789,681 to 2,790,313 _2458 Pf1N1B4_2459 - hypothetical protein, at 2,790,297 to 2,790,440 _2459
Locus Name Description Strand Phenotype
Pf1N1B4_2449 Probable short-chain dehydrogenase - insig.
Pf1N1B4_2450 Transposase and inactivated derivatives - insig.
Pf1N1B4_2451 Low-specificity L-threonine aldolase (EC 4.1.2.48) - insig.
Pf1N1B4_2452 Membrane protein, putative + insig.
Pf1N1B4_2453 hypothetical protein - insig.
Pf1N1B4_2454 Serine hydroxymethyltransferase (EC 2.1.2.1) (from data) + strong
Pf1N1B4_2455 Sarcosine oxidase beta subunit (EC 1.5.3.1) + strong
Pf1N1B4_2456 Sarcosine oxidase delta subunit (EC 1.5.3.1) + insig.
Pf1N1B4_2457 Sarcosine oxidase alpha subunit (EC 1.5.3.1) + strong
Pf1N1B4_2458 Sarcosine oxidase gamma subunit (EC 1.5.3.1) + insig.
Pf1N1B4_2459 hypothetical protein - no data

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