Gene info for HSERO_RS23010 in Herbaspirillum seropedicae SmR1

Updated annotation (from data): D-galacturonate transporter ExuT
Rationale: Specifically important for D-galacturonate utilization.
Original annotation: hexuronate transporter
Type 1: Protein-coding gene
Located on scaffold NC_014323, - strand, nucleotides 5,278,464 to 5,279,690
See nucleotide sequence around HSERO_RS23010 or for all of scaffold NC_014323

Other databases: NCBI, uniprot: D8IX31

Nearby Genes

500 ntHSERO_RS22985 and HSERO_RS22990 are separated by 300 nucleotidesHSERO_RS22990 and HSERO_RS22995 are separated by 94 nucleotidesHSERO_RS22995 and HSERO_RS23000 are separated by 1 nucleotidesHSERO_RS23000 and HSERO_RS23005 are separated by 496 nucleotidesHSERO_RS23005 and HSERO_RS23010 are separated by 105 nucleotidesHSERO_RS23010 and HSERO_RS23015 are separated by 491 nucleotidesHSERO_RS23015 and HSERO_RS23020 are separated by 83 nucleotidesHSERO_RS23020 and HSERO_RS23025 are separated by 51 nucleotidesHSERO_RS23025 and HSERO_RS23030 are separated by 58 nucleotidesHSERO_RS23030 and HSERO_RS23035 overlap by 4 nucleotides HSERO_RS22985: HSERO_RS22985 - MFS transporter, at 5,274,180 to 5,275,421 _RS22985 HSERO_RS22990: HSERO_RS22990 - transcriptional regulator, at 5,275,722 to 5,276,456 _RS22990 HSERO_RS22995: HSERO_RS22995 - antitoxin, at 5,276,551 to 5,276,946 _RS22995 HSERO_RS23000: HSERO_RS23000 - hypothetical protein, at 5,276,948 to 5,277,244 _RS23000 HSERO_RS23005: HSERO_RS23005 - glutathione S-transferase, at 5,277,741 to 5,278,358 _RS23005 HSERO_RS23010: HSERO_RS23010 - D-galacturonate transporter ExuT (from data), at 5,278,464 to 5,279,690 _RS23010 HSERO_RS23015: HSERO_RS23015 - GntR family transcriptional regulator, at 5,280,182 to 5,280,904 _RS23015 HSERO_RS23020: HSERO_RS23020 - amino acid ABC transporter, at 5,280,988 to 5,281,791 _RS23020 HSERO_RS23025: HSERO_RS23025 - phosphate ABC transporter ATP-binding protein, at 5,281,843 to 5,282,562 _RS23025 HSERO_RS23030: HSERO_RS23030 - amino acid ABC transporter permease, at 5,282,621 to 5,283,274 _RS23030 HSERO_RS23035: HSERO_RS23035 - ABC transporter permease, at 5,283,271 to 5,284,104 _RS23035
Locus Name Description Strand Phenotype
HSERO_RS22985 HSERO_RS22985 MFS transporter - insig.
HSERO_RS22990 HSERO_RS22990 transcriptional regulator + sig.
HSERO_RS22995 HSERO_RS22995 antitoxin - insig.
HSERO_RS23000 HSERO_RS23000 hypothetical protein - no data
HSERO_RS23005 HSERO_RS23005 glutathione S-transferase + insig.
HSERO_RS23010 HSERO_RS23010 D-galacturonate transporter ExuT (from data) - strong
HSERO_RS23015 HSERO_RS23015 GntR family transcriptional regulator + insig.
HSERO_RS23020 HSERO_RS23020 amino acid ABC transporter - insig.
HSERO_RS23025 HSERO_RS23025 phosphate ABC transporter ATP-binding protein - insig.
HSERO_RS23030 HSERO_RS23030 amino acid ABC transporter permease - insig.
HSERO_RS23035 HSERO_RS23035 ABC transporter permease - insig.

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