Gene info for HSERO_RS20320 in Herbaspirillum seropedicae SmR1

Updated annotation (from data): 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16)
Rationale: Important for fitness in most defined media. Semi-automated annotation based on the auxotrophic phenotype and a hit to HMM TIGR00007.
Original annotation: 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Type 1: Protein-coding gene
Located on scaffold NC_014323, - strand, nucleotides 4,657,853 to 4,658,650
See nucleotide sequence around HSERO_RS20320 or for all of scaffold NC_014323

Other databases: NCBI, uniprot: D8ISW8

Nearby Genes

500 ntHSERO_RS20295 and HSERO_RS20300 are separated by 73 nucleotidesHSERO_RS20300 and HSERO_RS20305 are separated by 49 nucleotidesHSERO_RS20305 and HSERO_RS20310 overlap by 4 nucleotidesHSERO_RS20310 and HSERO_RS20315 overlap by 4 nucleotidesHSERO_RS20315 and HSERO_RS20320 are separated by 1 nucleotidesHSERO_RS20320 and HSERO_RS20325 are separated by 76 nucleotidesHSERO_RS20325 and HSERO_RS20330 are separated by 61 nucleotidesHSERO_RS20330 and HSERO_RS20335 are separated by 73 nucleotidesHSERO_RS20335 and HSERO_RS20340 overlap by 26 nucleotidesHSERO_RS20340 and HSERO_RS20345 are separated by 4 nucleotides HSERO_RS20295: HSERO_RS20295 - preprotein translocase subunit TatA, at 4,655,548 to 4,655,751 _RS20295 HSERO_RS20300: HSERO_RS20300 - HIT family hydrolase, at 4,655,825 to 4,656,205 _RS20300 HSERO_RS20305: HSERO_RS20305 - phosphoribosyl-ATP pyrophosphatase, at 4,656,255 to 4,656,593 _RS20305 HSERO_RS20310: HSERO_RS20310 - phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (from data), at 4,656,590 to 4,657,090 _RS20310 HSERO_RS20315: HSERO_RS20315 - imidazole glycerol phosphate synthase, at 4,657,087 to 4,657,851 _RS20315 HSERO_RS20320: HSERO_RS20320 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data), at 4,657,853 to 4,658,650 _RS20320 HSERO_RS20325: HSERO_RS20325 - IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data), at 4,658,727 to 4,659,365 _RS20325 HSERO_RS20330: HSERO_RS20330 - imidazoleglycerol-phosphate dehydratase, at 4,659,427 to 4,660,023 _RS20330 HSERO_RS20335: HSERO_RS20335 - histidinol-phosphate aminotransferase, at 4,660,097 to 4,661,215 _RS20335 HSERO_RS20340: HSERO_RS20340 - DNA methylase N-4, at 4,661,190 to 4,662,020 _RS20340 HSERO_RS20345: HSERO_RS20345 - histidinol dehydrogenase, at 4,662,025 to 4,663,341 _RS20345
Locus Name Description Strand Phenotype
HSERO_RS20295 HSERO_RS20295 preprotein translocase subunit TatA - no data
HSERO_RS20300 HSERO_RS20300 HIT family hydrolase - no data
HSERO_RS20305 HSERO_RS20305 phosphoribosyl-ATP pyrophosphatase - no data
HSERO_RS20310 HSERO_RS20310 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (from data) - strong
HSERO_RS20315 HSERO_RS20315 imidazole glycerol phosphate synthase - strong
HSERO_RS20320 HSERO_RS20320 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) - strong
HSERO_RS20325 HSERO_RS20325 IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data) - strong
HSERO_RS20330 HSERO_RS20330 imidazoleglycerol-phosphate dehydratase - strong
HSERO_RS20335 HSERO_RS20335 histidinol-phosphate aminotransferase - insig.
HSERO_RS20340 HSERO_RS20340 DNA methylase N-4 - sig.
HSERO_RS20345 HSERO_RS20345 histidinol dehydrogenase - strong

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