Gene info for HSERO_RS17015 in Herbaspirillum seropedicae SmR1

Updated annotation (from data): sorbitol dehydrogenase (EC 1.1.1.14); xylitol dehydrogenase (EC 1.1.1.9)
Rationale: Specifically important for utilizing Xylitol. Automated validation from mutant phenotype: the predicted function (1.1.1.14, 1.1.1.9) was linked to the condition via a SEED subsystem. This annotation was also checked manually.
Original annotation: sulfurtransferase
Type 1: Protein-coding gene
Located on scaffold NC_014323, + strand, nucleotides 3,894,336 to 3,895,373
See nucleotide sequence around HSERO_RS17015 or for all of scaffold NC_014323

Other databases: NCBI, uniprot: D8IPI0

Nearby Genes

500 ntHSERO_RS16990 and HSERO_RS16995 are separated by 0 nucleotidesHSERO_RS16995 and HSERO_RS17000 are separated by 329 nucleotidesHSERO_RS17000 and HSERO_RS17005 are separated by 76 nucleotidesHSERO_RS17005 and HSERO_RS17010 overlap by 13 nucleotidesHSERO_RS17010 and HSERO_RS17015 are separated by 9 nucleotidesHSERO_RS17015 and HSERO_RS17020 are separated by 2 nucleotidesHSERO_RS17020 and HSERO_RS17025 overlap by 65 nucleotidesHSERO_RS17025 and HSERO_RS17030 are separated by 29 nucleotidesHSERO_RS17030 and HSERO_RS17035 are separated by 333 nucleotidesHSERO_RS17035 and HSERO_RS17040 are separated by 14 nucleotides HSERO_RS16990: HSERO_RS16990 - transcriptional regulator, at 3,888,922 to 3,889,590 _RS16990 HSERO_RS16995: HSERO_RS16995 - sensor histidine kinase, at 3,889,591 to 3,890,970 _RS16995 HSERO_RS17000: HSERO_RS17000 - ABC transporter for D-sorbitol/xylitol, substrate-binding component (from data), at 3,891,300 to 3,892,571 _RS17000 HSERO_RS17005: HSERO_RS17005 - ABC transporter for D-sorbitol/xylitol, permease component 1 (from data), at 3,892,648 to 3,893,526 _RS17005 HSERO_RS17010: HSERO_RS17010 - ABC transporter for D-sorbitol/xylitol, permease component 2 (from data), at 3,893,514 to 3,894,326 _RS17010 HSERO_RS17015: HSERO_RS17015 - sorbitol dehydrogenase (EC 1.1.1.14); xylitol dehydrogenase (EC 1.1.1.9) (from data), at 3,894,336 to 3,895,373 _RS17015 HSERO_RS17020: HSERO_RS17020 - ABC transporter for D-sorbitol/xylitol, ATPase component (from data), at 3,895,376 to 3,896,596 _RS17020 HSERO_RS17025: HSERO_RS17025 - AraC family transcriptional regulator, at 3,896,532 to 3,897,413 _RS17025 HSERO_RS17030: HSERO_RS17030 - xylulokinase, at 3,897,443 to 3,898,924 _RS17030 HSERO_RS17035: HSERO_RS17035 - hypothetical protein, at 3,899,258 to 3,901,747 _RS17035 HSERO_RS17040: HSERO_RS17040 - hypothetical protein, at 3,901,762 to 3,902,838 _RS17040
Locus Name Description Strand Phenotype
HSERO_RS16990 HSERO_RS16990 transcriptional regulator + sig.
HSERO_RS16995 HSERO_RS16995 sensor histidine kinase + insig.
HSERO_RS17000 HSERO_RS17000 ABC transporter for D-sorbitol/xylitol, substrate-binding component (from data) + strong
HSERO_RS17005 HSERO_RS17005 ABC transporter for D-sorbitol/xylitol, permease component 1 (from data) + strong
HSERO_RS17010 HSERO_RS17010 ABC transporter for D-sorbitol/xylitol, permease component 2 (from data) + strong
HSERO_RS17015 HSERO_RS17015 sorbitol dehydrogenase (EC 1.1.1.14); xylitol dehydrogenase (EC 1.1.1.9) (from data) + strong
HSERO_RS17020 HSERO_RS17020 ABC transporter for D-sorbitol/xylitol, ATPase component (from data) + strong
HSERO_RS17025 HSERO_RS17025 AraC family transcriptional regulator + strong
HSERO_RS17030 HSERO_RS17030 xylulokinase + strong
HSERO_RS17035 HSERO_RS17035 hypothetical protein + cofit
HSERO_RS17040 HSERO_RS17040 hypothetical protein + cofit

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