Gene info for HSERO_RS12125 in Herbaspirillum seropedicae SmR1

Updated annotation (from data): 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29)
Rationale: Specifically important for utilizing m-Inositol. This protein is a fusion of 5-keto-deoxygluconate kinase and DUF2090. As DUF2090 has distant similarity to aldolases, it may provide the missing 5-dehydro-2-deoxyphosphogluconate activity.
Original annotation: 5-dehydro-2-deoxygluconokinase
Type 1: Protein-coding gene
Located on scaffold NC_014323, + strand, nucleotides 2,753,684 to 2,755,657
See nucleotide sequence around HSERO_RS12125 or for all of scaffold NC_014323

Other databases: NCBI, uniprot: D8IVI7

Nearby Genes

500 ntHSERO_RS12100 and HSERO_RS12105 are separated by 54 nucleotidesHSERO_RS12105 and HSERO_RS12110 are separated by 317 nucleotidesHSERO_RS12110 and HSERO_RS12115 are separated by 116 nucleotidesHSERO_RS12115 and HSERO_RS12120 overlap by 4 nucleotidesHSERO_RS12120 and HSERO_RS12125 are separated by 10 nucleotidesHSERO_RS12125 and HSERO_RS12130 overlap by 4 nucleotidesHSERO_RS12130 and HSERO_RS12135 are separated by 60 nucleotidesHSERO_RS12135 and HSERO_RS12140 overlap by 4 nucleotidesHSERO_RS12140 and HSERO_RS12145 overlap by 4 nucleotidesHSERO_RS12145 and HSERO_RS12150 are separated by 343 nucleotides HSERO_RS12100: HSERO_RS12100 - oxidoreductase, at 2,748,346 to 2,749,371 _RS12100 HSERO_RS12105: HSERO_RS12105 - RpiR family transcriptional regulator, at 2,749,426 to 2,750,307 _RS12105 HSERO_RS12110: HSERO_RS12110 - sugar ABC transporter substrate-binding protein, at 2,750,625 to 2,751,620 _RS12110 HSERO_RS12115: HSERO_RS12115 - ATPase, at 2,751,737 to 2,752,876 _RS12115 HSERO_RS12120: HSERO_RS12120 - ABC transporter ATP-binding protein, at 2,752,873 to 2,753,673 _RS12120 HSERO_RS12125: HSERO_RS12125 - 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) (from data), at 2,753,684 to 2,755,657 _RS12125 HSERO_RS12130: HSERO_RS12130 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) (from data), at 2,755,654 to 2,757,531 _RS12130 HSERO_RS12135: HSERO_RS12135 - Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data), at 2,757,592 to 2,758,512 _RS12135 HSERO_RS12140: HSERO_RS12140 - 5-deoxyglucuronate isomerase, at 2,758,509 to 2,759,303 _RS12140 HSERO_RS12145: HSERO_RS12145 - hypothetical protein, at 2,759,300 to 2,759,617 _RS12145 HSERO_RS12150: HSERO_RS12150 - iron-regulated membrane protein, at 2,759,961 to 2,761,139 _RS12150
Locus Name Description Strand Phenotype
HSERO_RS12100 HSERO_RS12100 oxidoreductase + insig.
HSERO_RS12105 HSERO_RS12105 RpiR family transcriptional regulator - strong
HSERO_RS12110 HSERO_RS12110 sugar ABC transporter substrate-binding protein + strong
HSERO_RS12115 HSERO_RS12115 ATPase + strong
HSERO_RS12120 HSERO_RS12120 ABC transporter ATP-binding protein + strong
HSERO_RS12125 HSERO_RS12125 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) (from data) + strong
HSERO_RS12130 HSERO_RS12130 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) (from data) + strong
HSERO_RS12135 HSERO_RS12135 Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data) + strong
HSERO_RS12140 HSERO_RS12140 5-deoxyglucuronate isomerase + insig.
HSERO_RS12145 HSERO_RS12145 hypothetical protein - sig.
HSERO_RS12150 HSERO_RS12150 iron-regulated membrane protein + insig.

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