Gene info for HSERO_RS05260 in Herbaspirillum seropedicae SmR1

Updated annotation (from data): ABC transporter for L-fucose, substrate-binding component
Rationale: Specifically important for L-fucose utilization.
Original annotation: LacI family transcriptional regulator
Type 1: Protein-coding gene
Located on scaffold NC_014323, + strand, nucleotides 1,164,790 to 1,165,728
See nucleotide sequence around HSERO_RS05260 or for all of scaffold NC_014323

Other databases: NCBI, uniprot: D8J113

Nearby Genes

500 ntHSERO_RS05235 and HSERO_RS05240 are separated by 47 nucleotidesHSERO_RS05240 and HSERO_RS05245 are separated by 7 nucleotidesHSERO_RS05245 and HSERO_RS05250 are separated by 158 nucleotidesHSERO_RS05250 and HSERO_RS05255 are separated by 37 nucleotidesHSERO_RS05255 and HSERO_RS05260 are separated by 86 nucleotidesHSERO_RS05260 and HSERO_RS05265 are separated by 123 nucleotidesHSERO_RS05265 and HSERO_RS05270 are separated by 18 nucleotidesHSERO_RS05270 and HSERO_RS05275 are separated by 178 nucleotidesHSERO_RS05275 and HSERO_RS05280 overlap by 4 nucleotidesHSERO_RS05280 and HSERO_RS05285 overlap by 4 nucleotides HSERO_RS05235: HSERO_RS05235 - L-fuconate dehydratase (EC 4.2.1.68) (from data), at 1,159,430 to 1,160,707 _RS05235 HSERO_RS05240: HSERO_RS05240 - short-chain dehydrogenase, at 1,160,755 to 1,161,531 _RS05240 HSERO_RS05245: HSERO_RS05245 - hypothetical protein, at 1,161,539 to 1,161,901 _RS05245 HSERO_RS05250: HSERO_RS05250 - ABC transporter for L-fucose, ATPase component (from data), at 1,162,060 to 1,163,622 _RS05250 HSERO_RS05255: HSERO_RS05255 - ABC transporter for L-fucose, permease component (from data), at 1,163,660 to 1,164,703 _RS05255 HSERO_RS05260: HSERO_RS05260 - ABC transporter for L-fucose, substrate-binding component (from data), at 1,164,790 to 1,165,728 _RS05260 HSERO_RS05265: HSERO_RS05265 - L-fucono-1,5-lactonase (from data), at 1,165,852 to 1,166,721 _RS05265 HSERO_RS05270: HSERO_RS05270 - TetR family transcriptional regulator, at 1,166,740 to 1,167,360 _RS05270 HSERO_RS05275: HSERO_RS05275 - NADH-ubiquinone oxidoreductase subunit 6, at 1,167,539 to 1,168,825 _RS05275 HSERO_RS05280: HSERO_RS05280 - hypothetical protein, at 1,168,822 to 1,169,673 _RS05280 HSERO_RS05285: HSERO_RS05285 - cyclopropane-fatty-acyl-phospholipid synthase, at 1,169,670 to 1,170,881 _RS05285
Locus Name Description Strand Phenotype
HSERO_RS05235 HSERO_RS05235 L-fuconate dehydratase (EC 4.2.1.68) (from data) + strong
HSERO_RS05240 HSERO_RS05240 short-chain dehydrogenase + sig.
HSERO_RS05245 HSERO_RS05245 hypothetical protein + sig.
HSERO_RS05250 HSERO_RS05250 ABC transporter for L-fucose, ATPase component (from data) + strong
HSERO_RS05255 HSERO_RS05255 ABC transporter for L-fucose, permease component (from data) + sig.
HSERO_RS05260 HSERO_RS05260 ABC transporter for L-fucose, substrate-binding component (from data) + sig.
HSERO_RS05265 HSERO_RS05265 L-fucono-1,5-lactonase (from data) + insig.
HSERO_RS05270 HSERO_RS05270 TetR family transcriptional regulator - no data
HSERO_RS05275 HSERO_RS05275 NADH-ubiquinone oxidoreductase subunit 6 + insig.
HSERO_RS05280 HSERO_RS05280 hypothetical protein + insig.
HSERO_RS05285 HSERO_RS05285 cyclopropane-fatty-acyl-phospholipid synthase + insig.

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