Gene info for HSERO_RS05210 in Herbaspirillum seropedicae SmR1

Updated annotation (from data): L-arabinose 1-dehydrogenase (EC 1.1.1.46)
Rationale: Specifically important in carbon source L-Arabinose. Similar to characterized L-arabinose 1-dehydrogenases such as B8H1Z0.
Original annotation: 3-oxoacyl-ACP reductase
Type 1: Protein-coding gene
Located on scaffold NC_014323, + strand, nucleotides 1,153,665 to 1,154,450
See nucleotide sequence around HSERO_RS05210 or for all of scaffold NC_014323

Other databases: NCBI, uniprot: D8J103

Nearby Genes

500 ntHSERO_RS05185 and HSERO_RS05190 are separated by 219 nucleotidesHSERO_RS05190 and HSERO_RS05195 are separated by 206 nucleotidesHSERO_RS05195 and HSERO_RS05200 are separated by 74 nucleotidesHSERO_RS05200 and HSERO_RS05205 are separated by 93 nucleotidesHSERO_RS05205 and HSERO_RS05210 are separated by 63 nucleotidesHSERO_RS05210 and HSERO_RS05215 are separated by 297 nucleotidesHSERO_RS05215 and HSERO_RS05220 are separated by 323 nucleotidesHSERO_RS05220 and HSERO_RS05225 are separated by 192 nucleotidesHSERO_RS05225 and HSERO_RS05230 are separated by 19 nucleotidesHSERO_RS05230 and HSERO_RS05235 are separated by 353 nucleotides HSERO_RS05185: HSERO_RS05185 - ABC transporter permease, at 1,146,380 to 1,147,402 _RS05185 HSERO_RS05190: HSERO_RS05190 - sugar ABC transporter substrate-binding protein, at 1,147,622 to 1,148,695 _RS05190 HSERO_RS05195: HSERO_RS05195 - xylose ABC transporter ATP-binding protein, at 1,148,902 to 1,150,458 _RS05195 HSERO_RS05200: HSERO_RS05200 - ABC transporter permease, at 1,150,533 to 1,151,750 _RS05200 HSERO_RS05205: HSERO_RS05205 - L-arabonate dehydratase (EC 4.2.1.25) (from data), at 1,151,844 to 1,153,601 _RS05205 HSERO_RS05210: HSERO_RS05210 - L-arabinose 1-dehydrogenase (EC 1.1.1.46) (from data), at 1,153,665 to 1,154,450 _RS05210 HSERO_RS05215: HSERO_RS05215 - LysR family transcriptional regulator, at 1,154,748 to 1,155,689 _RS05215 HSERO_RS05220: HSERO_RS05220 - porin, at 1,156,013 to 1,157,137 _RS05220 HSERO_RS05225: HSERO_RS05225 - L-arabinolactonase (EC 3.1.1.15) (from data), at 1,157,330 to 1,158,208 _RS05225 HSERO_RS05230: HSERO_RS05230 - IclR family transcriptional regulator, at 1,158,228 to 1,159,076 _RS05230 HSERO_RS05235: HSERO_RS05235 - L-fuconate dehydratase (EC 4.2.1.68) (from data), at 1,159,430 to 1,160,707 _RS05235
Locus Name Description Strand Phenotype
HSERO_RS05185 HSERO_RS05185 ABC transporter permease + insig.
HSERO_RS05190 HSERO_RS05190 sugar ABC transporter substrate-binding protein + strong
HSERO_RS05195 HSERO_RS05195 xylose ABC transporter ATP-binding protein + strong
HSERO_RS05200 HSERO_RS05200 ABC transporter permease + strong
HSERO_RS05205 HSERO_RS05205 L-arabonate dehydratase (EC 4.2.1.25) (from data) + strong
HSERO_RS05210 HSERO_RS05210 L-arabinose 1-dehydrogenase (EC 1.1.1.46) (from data) + strong
HSERO_RS05215 HSERO_RS05215 LysR family transcriptional regulator - strong
HSERO_RS05220 HSERO_RS05220 porin + strong
HSERO_RS05225 HSERO_RS05225 L-arabinolactonase (EC 3.1.1.15) (from data) + strong
HSERO_RS05230 HSERO_RS05230 IclR family transcriptional regulator - no data
HSERO_RS05235 HSERO_RS05235 L-fuconate dehydratase (EC 4.2.1.68) (from data) + strong

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