Gene info for HSERO_RS00900 in Herbaspirillum seropedicae SmR1

Updated annotation (from data): L-proline ABC transporter, ATPase component 2
Rationale: Specifically important for utilizing proline as a carbon or nitrogen source
Original annotation: amino acid ABC transporter ATPase
Type 1: Protein-coding gene
Located on scaffold NC_014323, + strand, nucleotides 187,220 to 187,945
See nucleotide sequence around HSERO_RS00900 or for all of scaffold NC_014323

Other databases: NCBI, uniprot: D8IUY7

Nearby Genes

500 ntHSERO_RS00875 and HSERO_RS00880 are separated by 15 nucleotidesHSERO_RS00880 and HSERO_RS00885 are separated by 141 nucleotidesHSERO_RS00885 and HSERO_RS00890 are separated by 54 nucleotidesHSERO_RS00890 and HSERO_RS00895 are separated by 15 nucleotidesHSERO_RS00895 and HSERO_RS00900 are separated by 196 nucleotidesHSERO_RS00900 and HSERO_RS00905 are separated by 257 nucleotidesHSERO_RS00905 and HSERO_RS00910 are separated by 198 nucleotidesHSERO_RS00910 and HSERO_RS00915 are separated by 64 nucleotidesHSERO_RS00915 and HSERO_RS00920 are separated by 22 nucleotidesHSERO_RS00920 and HSERO_RS00925 are separated by 322 nucleotides HSERO_RS00875: HSERO_RS00875 - hypothetical protein, at 181,936 to 182,946 _RS00875 HSERO_RS00880: HSERO_RS00880 - ornithine cyclodeaminase, at 182,962 to 183,900 _RS00880 HSERO_RS00885: HSERO_RS00885 - L-proline ABC transporter, permease component 1 (from data), at 184,042 to 184,971 _RS00885 HSERO_RS00890: HSERO_RS00890 - L-proline ABC transporter, permease component 2 (from data), at 185,026 to 186,240 _RS00890 HSERO_RS00895: HSERO_RS00895 - L-proline ABC transporter, ATPase component 1 (from data), at 186,256 to 187,023 _RS00895 HSERO_RS00900: HSERO_RS00900 - L-proline ABC transporter, ATPase component 2 (from data), at 187,220 to 187,945 _RS00900 HSERO_RS00905: HSERO_RS00905 - L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data), at 188,203 to 191,895 _RS00905 HSERO_RS00910: HSERO_RS00910 - peptidase, at 192,094 to 192,630 _RS00910 HSERO_RS00915: HSERO_RS00915 - ATP-dependent protease, at 192,695 to 194,041 _RS00915 HSERO_RS00920: HSERO_RS00920 - hypothetical protein, at 194,064 to 194,267 _RS00920 HSERO_RS00925: HSERO_RS00925 - porin, at 194,590 to 195,762 _RS00925
Locus Name Description Strand Phenotype
HSERO_RS00875 HSERO_RS00875 hypothetical protein + strong
HSERO_RS00880 HSERO_RS00880 ornithine cyclodeaminase + sig.
HSERO_RS00885 HSERO_RS00885 L-proline ABC transporter, permease component 1 (from data) + no data
HSERO_RS00890 HSERO_RS00890 L-proline ABC transporter, permease component 2 (from data) + sig.
HSERO_RS00895 HSERO_RS00895 L-proline ABC transporter, ATPase component 1 (from data) + sig.
HSERO_RS00900 HSERO_RS00900 L-proline ABC transporter, ATPase component 2 (from data) + insig.
HSERO_RS00905 HSERO_RS00905 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) + strong
HSERO_RS00910 HSERO_RS00910 peptidase + cofit
HSERO_RS00915 HSERO_RS00915 ATP-dependent protease + cofit
HSERO_RS00920 HSERO_RS00920 hypothetical protein + insig.
HSERO_RS00925 HSERO_RS00925 porin + strong

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