Gene info for HSERO_RS00890 in Herbaspirillum seropedicae SmR1

Updated annotation (from data): L-proline ABC transporter, permease component 2
Rationale: Specifically important for utilizing proline as a carbon or nitrogen source
Original annotation: ABC transporter ATP-binding protein
Type 1: Protein-coding gene
Located on scaffold NC_014323, + strand, nucleotides 185,026 to 186,240
See nucleotide sequence around HSERO_RS00890 or for all of scaffold NC_014323

Other databases: NCBI, uniprot: D8IUY5

Nearby Genes

500 ntHSERO_RS00865 and HSERO_RS00870 are separated by 317 nucleotidesHSERO_RS00870 and HSERO_RS00875 are separated by 228 nucleotidesHSERO_RS00875 and HSERO_RS00880 are separated by 15 nucleotidesHSERO_RS00880 and HSERO_RS00885 are separated by 141 nucleotidesHSERO_RS00885 and HSERO_RS00890 are separated by 54 nucleotidesHSERO_RS00890 and HSERO_RS00895 are separated by 15 nucleotidesHSERO_RS00895 and HSERO_RS00900 are separated by 196 nucleotidesHSERO_RS00900 and HSERO_RS00905 are separated by 257 nucleotidesHSERO_RS00905 and HSERO_RS00910 are separated by 198 nucleotidesHSERO_RS00910 and HSERO_RS00915 are separated by 64 nucleotides HSERO_RS00865: HSERO_RS00865 - AsnC family transcriptional regulator, at 179,789 to 180,253 _RS00865 HSERO_RS00870: HSERO_RS00870 - L-proline ABC transporter, substrate-binding component (from data), at 180,571 to 181,707 _RS00870 HSERO_RS00875: HSERO_RS00875 - hypothetical protein, at 181,936 to 182,946 _RS00875 HSERO_RS00880: HSERO_RS00880 - ornithine cyclodeaminase, at 182,962 to 183,900 _RS00880 HSERO_RS00885: HSERO_RS00885 - L-proline ABC transporter, permease component 1 (from data), at 184,042 to 184,971 _RS00885 HSERO_RS00890: HSERO_RS00890 - L-proline ABC transporter, permease component 2 (from data), at 185,026 to 186,240 _RS00890 HSERO_RS00895: HSERO_RS00895 - L-proline ABC transporter, ATPase component 1 (from data), at 186,256 to 187,023 _RS00895 HSERO_RS00900: HSERO_RS00900 - L-proline ABC transporter, ATPase component 2 (from data), at 187,220 to 187,945 _RS00900 HSERO_RS00905: HSERO_RS00905 - L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data), at 188,203 to 191,895 _RS00905 HSERO_RS00910: HSERO_RS00910 - peptidase, at 192,094 to 192,630 _RS00910 HSERO_RS00915: HSERO_RS00915 - ATP-dependent protease, at 192,695 to 194,041 _RS00915
Locus Name Description Strand Phenotype
HSERO_RS00865 HSERO_RS00865 AsnC family transcriptional regulator - strong
HSERO_RS00870 HSERO_RS00870 L-proline ABC transporter, substrate-binding component (from data) + strong
HSERO_RS00875 HSERO_RS00875 hypothetical protein + strong
HSERO_RS00880 HSERO_RS00880 ornithine cyclodeaminase + sig.
HSERO_RS00885 HSERO_RS00885 L-proline ABC transporter, permease component 1 (from data) + no data
HSERO_RS00890 HSERO_RS00890 L-proline ABC transporter, permease component 2 (from data) + sig.
HSERO_RS00895 HSERO_RS00895 L-proline ABC transporter, ATPase component 1 (from data) + sig.
HSERO_RS00900 HSERO_RS00900 L-proline ABC transporter, ATPase component 2 (from data) + insig.
HSERO_RS00905 HSERO_RS00905 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) + strong
HSERO_RS00910 HSERO_RS00910 peptidase + cofit
HSERO_RS00915 HSERO_RS00915 ATP-dependent protease + cofit

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