Gene info for HSERO_RS00870 in Herbaspirillum seropedicae SmR1

Updated annotation (from data): L-proline ABC transporter, substrate-binding component
Rationale: Specifically important for utilizing proline as a carbon or nitrogen source
Original annotation: ABC transporter substrate-binding protein
Type 1: Protein-coding gene
Located on scaffold NC_014323, + strand, nucleotides 180,571 to 181,707
See nucleotide sequence around HSERO_RS00870 or for all of scaffold NC_014323

Other databases: NCBI, uniprot: D8IUY1

Nearby Genes

500 ntHSERO_RS00845 and HSERO_RS00850 are separated by 181 nucleotidesHSERO_RS00850 and HSERO_RS00855 are separated by 122 nucleotidesHSERO_RS00855 and HSERO_RS00860 are separated by 162 nucleotidesHSERO_RS00860 and HSERO_RS00865 are separated by 23 nucleotidesHSERO_RS00865 and HSERO_RS00870 are separated by 317 nucleotidesHSERO_RS00870 and HSERO_RS00875 are separated by 228 nucleotidesHSERO_RS00875 and HSERO_RS00880 are separated by 15 nucleotidesHSERO_RS00880 and HSERO_RS00885 are separated by 141 nucleotidesHSERO_RS00885 and HSERO_RS00890 are separated by 54 nucleotidesHSERO_RS00890 and HSERO_RS00895 are separated by 15 nucleotides HSERO_RS00845: HSERO_RS00845 - hypothetical protein, at 175,302 to 175,721 _RS00845 HSERO_RS00850: HSERO_RS00850 - TonB-dependent receptor, at 175,903 to 177,975 _RS00850 HSERO_RS00855: HSERO_RS00855 - alkylhydroperoxidase, at 178,098 to 178,631 _RS00855 HSERO_RS00860: HSERO_RS00860 - AraC family transcriptional regulator, at 178,794 to 179,765 _RS00860 HSERO_RS00865: HSERO_RS00865 - AsnC family transcriptional regulator, at 179,789 to 180,253 _RS00865 HSERO_RS00870: HSERO_RS00870 - L-proline ABC transporter, substrate-binding component (from data), at 180,571 to 181,707 _RS00870 HSERO_RS00875: HSERO_RS00875 - hypothetical protein, at 181,936 to 182,946 _RS00875 HSERO_RS00880: HSERO_RS00880 - ornithine cyclodeaminase, at 182,962 to 183,900 _RS00880 HSERO_RS00885: HSERO_RS00885 - L-proline ABC transporter, permease component 1 (from data), at 184,042 to 184,971 _RS00885 HSERO_RS00890: HSERO_RS00890 - L-proline ABC transporter, permease component 2 (from data), at 185,026 to 186,240 _RS00890 HSERO_RS00895: HSERO_RS00895 - L-proline ABC transporter, ATPase component 1 (from data), at 186,256 to 187,023 _RS00895
Locus Name Description Strand Phenotype
HSERO_RS00845 HSERO_RS00845 hypothetical protein + insig.
HSERO_RS00850 HSERO_RS00850 TonB-dependent receptor + insig.
HSERO_RS00855 HSERO_RS00855 alkylhydroperoxidase - insig.
HSERO_RS00860 HSERO_RS00860 AraC family transcriptional regulator + insig.
HSERO_RS00865 HSERO_RS00865 AsnC family transcriptional regulator - strong
HSERO_RS00870 HSERO_RS00870 L-proline ABC transporter, substrate-binding component (from data) + strong
HSERO_RS00875 HSERO_RS00875 hypothetical protein + strong
HSERO_RS00880 HSERO_RS00880 ornithine cyclodeaminase + sig.
HSERO_RS00885 HSERO_RS00885 L-proline ABC transporter, permease component 1 (from data) + no data
HSERO_RS00890 HSERO_RS00890 L-proline ABC transporter, permease component 2 (from data) + sig.
HSERO_RS00895 HSERO_RS00895 L-proline ABC transporter, ATPase component 1 (from data) + sig.

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